Difference between revisions of "Homo sapiens catenin beta 1 (CTNNB1)"

From Biolecture.org
imported>위민우
imported>위민우
 
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<p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">&gt;[[Perl Code]]</span></span></p>
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<p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">&gt;[[Perl Code of CTNNB1]]</span></span></p>
  
 
<p>&nbsp;</p>
 
<p>&nbsp;</p>
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<p>[Second structure]</p>
 
<p>[Second structure]</p>
  
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<p>&nbsp;</p>
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<p>http://www.compbio.dundee.ac.uk/jpred4/results/jp_RZOdinb/jp_RZOdinb.results.html</p>
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<p>Simple result : (<span style="color:#FF0000">H</span>=alpha helix <span style="color:#DAA520">E</span>=beta sheet)</p>
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 +
<p><code>----------------<span style="color:#FF0000">HHHHHHHHHH</span>-----------------------------------<span style="color:#FF0000">HHH</span>---------------<span style="color:#FF0000">HHHHHHHHHHH</span>-------<span style="color:#FF0000">HH-HHHHHH</span>-------------<span style="color:#FF0000">HHHHHHH-HHHHHHHHHHHHHH</span>----<span style="color:#FF0000">HHHHHHHHHHHHHHH</span>----<span style="color:#FF0000">HHHHHHHHHHHHHHH</span>-----<span style="color:#FF0000">HHHHHH</span>---<span style="color:#FF0000">HHHHHHHHH</span>------<span style="color:#FF0000">HHHHHHHHHHHHHH</span>-----<span style="color:#FF0000">HHHHH</span>-----<span style="color:#FF0000">HHHHHH</span>-----<span style="color:#FF0000">HHHHHHHHHHHHHH</span>--------<span style="color:#FF0000">HHHHHH</span>---<span style="color:#FF0000">HHHHHH</span>-------<span style="color:#DAA520">EE</span><span style="color:#FF0000">HHHHHHHHH</span>---------<span style="color:#DAA520">EEEE</span>-----<span style="color:#FF0000">HHHHHHHH</span>----<span style="color:#FF0000">HHHHHHHHHHH</span>------------------<span style="color:#FF0000">HHHHHHHH</span>---<span style="color:#FF0000">HHHHHHHHHHHHHH</span>--------<span style="color:#FF0000">HHHHHHHHHHHH</span>--------<span style="color:#FF0000">HHHHHHHHH</span>------------<span style="color:#DAA520">E</span>------<span style="color:#FF0000">HHHHHHHHH</span>--------------------------------------<span style="color:#FF0000">HHHHH</span>--------<span style="color:#FF0000">HHHHHHHHHHHHHHHH</span>--------------<span style="color:#FF0000">HHHHHHHHHH</span>-<span style="color:#FF0000">HHHHHH</span>--------------<span style="color:#FF0000">HHHHHHHHHHHHHHH</span>-------<span style="color:#FF0000">HHHHH</span>----<span style="color:#FF0000">HHHHHHHH</span>----<span style="color:#FF0000">HHHHHHHHHHHHHHH</span>---<span style="color:#FF0000">HHHHHHHH</span>----<span style="color:#FF0000">HHHHHHH</span>-----<span style="color:#FF0000">HHHHHHHHHHHHH</span>-----<span style="color:#FF0000">HHHHHHHHHH</span>---<span style="color:#FF0000">HH</span>--------<span style="color:#FF0000">HHHHHH</span>-------------------------------------------------------------------------------------</code></p>
  
 
<p>________________________________________________________________________________________________________________________________________________________________________________________________________</p>
 
<p>________________________________________________________________________________________________________________________________________________________________________________________________________</p>
  
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<p>[[<a href="http://biolecture.org/index.php/Minwoo_Wie" title="Minwoo Wie">Minwoo Wie</a>]]</p>
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<p>[[H.W.1]]</p>

Latest revision as of 11:52, 26 May 2016

>Perl Code of CTNNB1

 

[DNA sequence]

ATGGCTACTCAAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCT

CTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGATATTGATGGACAGTATGCAATGACTCGAG

CTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGT

TGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGTGCAATCCCTGAACTGACAAAACTGCTAAATGACGAGGACCAGGTGGTGGTTAATAAGGCTGCAGTTATGGTCCATCAGCTTTCTAAAAAGG

AAGCTTCCAGACACGCTATCATGCGTTCTCCTCAGATGGTGTCTGCTATTGTACGTACCATGCAGAATACAAATGATGTAGAAACAGCTCGTTGTACCGCTGGGACCTTGCATAACCTTTCCCATCATCGTGAGGGC

TTACTGGCCATCTTTAAGTCTGGAGGCATTCCTGCCCTGGTGAAAATGCTTGGTTCACCAGTGGATTCTGTGTTGTTTTATGCCATTACAACTCTCCACAACCTTTTATTACATCAAGAAGGAGCTAAAATGGCAGTG

CGTTTAGCTGGTGGGCTGCAGAAAATGGTTGCCTTGCTCAACAAAACAAATGTTAAATTCTTGGCTATTACGACAGACTGCCTTCAAATTTTAGCTTATGGCAACCAAGAAAGCAAGCTCATCATACTGGCTAGTGGT

GGACCCCAAGCTTTAGTAAATATAATGAGGACCTATACTTACGAAAAACTACTGTGGACCACAAGCAGAGTGCTGAAGGTGCTATCTGTCTGCTCTAGTAATAAGCCGGCTATTGTAGAAGCTGGTGGAATGCAAGC

TTTAGGACTTCACCTGACAGATCCAAGTCAACGTCTTGTTCAGAACTGTCTTTGGACTCTCAGGAATCTTTCAGATGCTGCAACTAAACAGGAAGGGATGGAAGGTCTCCTTGGGACTCTTGTTCAGCTTCTGGGT

TCAGATGATATAAATGTGGTCACCTGTGCAGCTGGAATTCTTTCTAACCTCACTTGCAATAATTATAAGAACAAGATGATGGTCTGCCAAGTGGGTGGTATAGAGGCTCTTGTGCGTACTGTCCTTCGGGCTGGTGAC

AGGGAAGACATCACTGAGCCTGCCATCTGTGCTCTTCGTCATCTGACCAGCCGACACCAAGAAGCAGAGATGGCCCAGAATGCAGTTCGCCTTCACTATGGACTACCAGTTGTGGTTAAGCTCTTACACCCACC

ATCCCACTGGCCTCTGATAAAGGCTACTGTTGGATTGATTCGAAATCTTGCCCTTTGTCCCGCAAATCATGCACCTTTGCGTGAGCAGGGTGCCATTCCACGACTAGTTCAGTTGCTTGTTCGTGCACATCAGGAT

ACCCAGCGCCGTACGTCCATGGGTGGGACACAGCAGCAATTTGTGGAGGGGGTCCGCATGGAAGAAATAGTTGAAGGTTGTACCGGAGCCCTTCACATCCTAGCTCGGGATGTTCACAACCGAATTGTTATCAG

AGGACTAAATACCATTCCATTGTTTGTGCAGCTGCTTTATTCTCCCATTGAAAACATCCAAAGAGTAGCTGCAGGGGTCCTCTGTGAACTTGCTCAGGACAAGGAAGCTGCAGAAGCTATTGAAGCTGAGGGAGCC

ACAGCTCCTCTGACAGAGTTACTTCACTCTAGGAATGAAGGTGTGGCGACATATGCAGCTGCTGTTTTGTTCCGAATGTCTGAGGACAAGCCACAAGATTACAAGAAACGGCTTTCAGTTGAGCTGACCAGCTCT

CTCTTCAGAACAGAGCCAATGGCTTGGAATGAGACTGCTGATCTTGGACTTGATATTGGTGCCCAGGGAGAACCCCTTGGATATCGCCAGGATGATCCTAGCTATCGTTCTTTTCACTCTGGTGGATATGGCCAGG

ATGCCTTGGGTATGGACCCCATGATGGAACATGAGATGGGTGGCCACCACCCTGGTGCTGACTATCCAGTTGATGGGCTGCCAGATCTGGGGCATGCCCAGGACCTCATGGATGGGCTGCCTCCAGGTGACAG

CAATCAGCTGGCCTGGTTTGATACTGACCTGTAA

 

[Amino acid sequence]

MATQADLMELDMAMEPDRKAAVSHWQQQSYLDSGIHSGATTTAPSLSGKGNPEEEDVDTSQVLYEWEQGFSQSFTQEQVADIDGQYAMTRAQRVRAAMFPETLDEGMQIPSTQFDAAHPTNVQRLAEPSQMLKH

AVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV

RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDI

NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM

GGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADL

GLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDALGMDPMMEHEMG GHHPGADYPVDGLPDLGHAQDLMDGLPPGDSNQLAWFDTDL

 

[Second structure]

http://www.compbio.dundee.ac.uk/jpred4/results/jp_RZOdinb/jp_RZOdinb.results.html

Simple result : (H=alpha helix E=beta sheet)

----------------HHHHHHHHHH-----------------------------------HHH---------------HHHHHHHHHHH-------HH-HHHHHH-------------HHHHHHH-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-----HHHHHH---HHHHHHHHH------HHHHHHHHHHHHHH-----HHHHH-----HHHHHH-----HHHHHHHHHHHHHH--------HHHHHH---HHHHHH-------EEHHHHHHHHH---------EEEE-----HHHHHHHH----HHHHHHHHHHH------------------HHHHHHHH---HHHHHHHHHHHHHH--------HHHHHHHHHHHH--------HHHHHHHHH------------E------HHHHHHHHH--------------------------------------HHHHH--------HHHHHHHHHHHHHHHH--------------HHHHHHHHHH-HHHHHH--------------HHHHHHHHHHHHHHH-------HHHHH----HHHHHHHH----HHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHH-----HHHHHHHHHHHHH-----HHHHHHHHHH---HH--------HHHHHH-------------------------------------------------------------------------------------

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H.W.1

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