imported>Yeong Jae Kim |
imported>S |
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| − | <p><span style="font-size:20px"><strong>Subject : Learn Perl programming language and learn bioinformatics using it.</strong></span></p> | + | <p><span style="font-size:20px">Code for Translation DNA to AminoAcid (by Perl)</span></p> |
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| − | <p><strong>1. Install and Learn BioPerl</strong></p>
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| − | <p>Learn principle of perl</p>
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| − | <p>https://qntm.org/files/perl/perl_kr.html</p>
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| − | <p>install perl and editor(Padre the Perl IDE)</p>
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| − | <p>https://www.youtube.com/watch?time_continue=152&v=R05XpUH876I</p>
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| | <p> </p> | | <p> </p> |
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| − | <p><strong>2.Make a Perl program translating 'all' combinations of triple bases into amino acids</strong></p>
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| | <p> </p> | | <p> </p> |
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| − | <p><br />
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| − | <strong>3.Pick 5 protein sequences and predict their secondary structures using available prediction programs<br />
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| − | 4.Open and re-write one FASTA file containing one protein sequence of TERT<br />
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| − | 5.Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file<br />
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| − | 6.Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file<br />
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| − | 7.In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc<br />
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| − | 8.Align two protein sequences using a dynamic programming method in Perl<br />
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| − | 9.Randomly generate five 100 AA long protein sequences and store them in a FASTA file<br />
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| − | 10.Create a flat text file database of protein sequences with hash function in Perl</strong><br />
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| − | </p>
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Latest revision as of 00:38, 24 May 2016
Code for Translation DNA to AminoAcid (by Perl)
