Difference between revisions of "Homework of week1-1"
imported>Yeong Jae Kim |
imported>Yeong Jae Kim |
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| + | <p><span style="font-size:20px"><strong>Subject : Learn Perl programming language and learn bioinformatics using it.</strong></span></p> | ||
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| + | <p><strong>1. Install and Learn BioPerl</strong></p> | ||
| + | |||
<p>Learn principle of perl</p> | <p>Learn principle of perl</p> | ||
<p>https://qntm.org/files/perl/perl_kr.html</p> | <p>https://qntm.org/files/perl/perl_kr.html</p> | ||
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| − | |||
<p>install perl and editor(Padre the Perl IDE)</p> | <p>install perl and editor(Padre the Perl IDE)</p> | ||
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<p> </p> | <p> </p> | ||
| − | <p> | + | <p><strong>2.Make a Perl program translating 'all' combinations of triple bases into amino acids</strong></p> |
| − | + | ||
| − | Make a Perl program translating 'all' combinations of triple bases into amino acids<br /> | + | <p> </p> |
| − | Pick 5 protein sequences and predict their secondary structures using available prediction programs<br /> | + | |
| − | Open and re-write one FASTA file containing one protein sequence of TERT<br /> | + | <p><br /> |
| − | Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file<br /> | + | <strong>3.Pick 5 protein sequences and predict their secondary structures using available prediction programs<br /> |
| − | Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file<br /> | + | 4.Open and re-write one FASTA file containing one protein sequence of TERT<br /> |
| − | In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc<br /> | + | 5.Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file<br /> |
| − | Align two protein sequences using a dynamic programming method in Perl<br /> | + | 6.Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file<br /> |
| − | Randomly generate five 100 AA long protein sequences and store them in a FASTA file<br /> | + | 7.In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc<br /> |
| − | Create a flat text file database of protein sequences with hash function in Perl<br /> | + | 8.Align two protein sequences using a dynamic programming method in Perl<br /> |
| + | 9.Randomly generate five 100 AA long protein sequences and store them in a FASTA file<br /> | ||
| + | 10.Create a flat text file database of protein sequences with hash function in Perl</strong><br /> | ||
</p> | </p> | ||
Revision as of 15:36, 20 May 2016
Subject : Learn Perl programming language and learn bioinformatics using it.
1. Install and Learn BioPerl
Learn principle of perl
https://qntm.org/files/perl/perl_kr.html
install perl and editor(Padre the Perl IDE)
https://www.youtube.com/watch?time_continue=152&v=R05XpUH876I
2.Make a Perl program translating 'all' combinations of triple bases into amino acids
3.Pick 5 protein sequences and predict their secondary structures using available prediction programs
4.Open and re-write one FASTA file containing one protein sequence of TERT
5.Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file
6.Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file
7.In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc
8.Align two protein sequences using a dynamic programming method in Perl
9.Randomly generate five 100 AA long protein sequences and store them in a FASTA file
10.Create a flat text file database of protein sequences with hash function in Perl
