Difference between revisions of "Homework of week1-1"
imported>Yeong Jae Kim |
imported>Yeong Jae Kim |
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<p>https://www.youtube.com/watch?time_continue=152&v=R05XpUH876I</p> | <p>https://www.youtube.com/watch?time_continue=152&v=R05XpUH876I</p> | ||
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| + | <p> </p> | ||
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| + | <p>1. Learn Perl programming language and learn bioinformatics using it.<br /> | ||
| + | Install and Learn BioPerl<br /> | ||
| + | Make a Perl program translating 'all' combinations of triple bases into amino acids<br /> | ||
| + | Pick 5 protein sequences and predict their secondary structures using available prediction programs<br /> | ||
| + | Open and re-write one FASTA file containing one protein sequence of TERT<br /> | ||
| + | Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file<br /> | ||
| + | Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file<br /> | ||
| + | In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc<br /> | ||
| + | Align two protein sequences using a dynamic programming method in Perl<br /> | ||
| + | Randomly generate five 100 AA long protein sequences and store them in a FASTA file<br /> | ||
| + | Create a flat text file database of protein sequences with hash function in Perl<br /> | ||
| + | </p> | ||
Revision as of 15:27, 20 May 2016
Learn principle of perl
https://qntm.org/files/perl/perl_kr.html
install perl and editor(Padre the Perl IDE)
https://www.youtube.com/watch?time_continue=152&v=R05XpUH876I
1. Learn Perl programming language and learn bioinformatics using it.
Install and Learn BioPerl
Make a Perl program translating 'all' combinations of triple bases into amino acids
Pick 5 protein sequences and predict their secondary structures using available prediction programs
Open and re-write one FASTA file containing one protein sequence of TERT
Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file
Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file
In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc
Align two protein sequences using a dynamic programming method in Perl
Randomly generate five 100 AA long protein sequences and store them in a FASTA file
Create a flat text file database of protein sequences with hash function in Perl
