C-value

The term C-value refers to the amount of DNA contained within a haploid nucleus (e.g. a gamete) or one half the amount in a diploid somatic cell of a eukaryotic organism. In some cases (notably among diploid organisms), the terms C-value and genome size are used interchangeably, however in polyploids the C-value may represent two genomes contained within the same nucleus. Greilhuber et al. have suggested some new layers of terminology and associated abbreviations to clarify this issue, but these somewhat complex additions have yet to be used by other authors. C-values are reported in picograms.

Origin of the term

Many authors have incorrectly assumed that the "C" in "C-value" refers to "characteristic", "content", or "complement". Even among authors who have attempted to trace the origin of the term, there had been some confusion because Hewson Swift did not define it explicitly when he coined it in 1950. In his original paper, Swift appeared to use the designation "1C value", "2C value", etc., in reference to "classes" of DNA content (e.g., Gregory 2001, 2002); however, Swift explained in personal correspondence to Prof. Michael D. Bennett in 1975 that "I am afraid the letter C stood for nothing more glamorous than 'constant', i.e., the amount of DNA that was characteristic of a particular genotype" (quoted in Bennett and Leitch 2005). This is in reference to the report in 1948 by Vendrely and Vendrely of a "remarkable constancy in the nuclear DNA content of all the cells in all the individuals within a given animal species" (translated from the original French). Swift's study of this topic related specifically to variation (or lack thereof) among chromosome sets in different cell types within individuals, but his notation evolved into "C-value" in reference to the haploid DNA content of individual species and retains this usage today.

Variation among species

See also: C-value enigma

C-values vary enormously among species. In animals they range more than 3,300-fold, and in land plants they differ by a factor of about 1,000. Protist genomes have been reported to vary more than 300,000-fold in size, but the high end of this range (Amoeba) has been called into question. Variation in C-values bears no relationship to the complexity of the organism or the number of genes contained in its genome, an observation that was deemed wholly counterintuitive before the discovery of non-coding DNA and which became known as the C-value paradox as a result. However, although there is no longer any paradoxical aspect to the discrepancy between C-value and gene number, this term remains in common usage. For reasons of conceptual clarification, the various puzzles that remain with regard to genome size variation instead have been suggested to more accurately comprise a complex but clearly defined puzzle known as the C-value enigma. C-values correlate with a range of features at the cell and organism levels, including cell size, cell division rate, and, depending on the taxon, body size, metabolic rate, developmental rate, organ complexity, geographical distribution, and/or extinction risk (for recent reviews, see Bennett and Leitch 2005; Gregory 2005.)

Calculating C-values

Table 1: Relative Molecular Weights of Nucleotides†

Nucleotide	Chemical formula	Relative molecular weight
2′-deoxyadenosine 5′-monophosphate	C10H14N5O6P	331.2213
2′-deoxythymidine 5′-monophosphate	C10H15N2O8P	322.2079
2′-deoxyguanosine 5′-monophosphate	C10H14N5O7P	347.2207
2′-deoxycytidine 5′-monophosphate	C9H14N3O7P	307.1966

†Source of table: Doležel et al., 2003

By using the data in Table 1, relative weights of nucleotide pairs can be calculated as follows: AT = 615.3830 and GC = 616.3711. Provided the ratio of AT to GC pairs is 1:1, the mean relative weight of one nucleotide pair is 615.8771 (±1%).

The relative molecular weight may be converted to an absolute value by multiplying it by the atomic mass unit (1 u), which equals one-twelfth of a mass of 12C, i.e., 1.660539 × 10^-27 kg. Consequently, the mean weight of one nucleotide pair would be 1.023 × 10^-9 pg, and 1 pg of DNA would represent 0.978 × 10⁹ base pairs.

The formulas for converting the number of nucleotide pairs (or base pairs) to picograms of DNA and vice-versa are:

genome size (bp) = (0.978 x 10<sup><font size="2">9</font></sup>) x DNA content (pg)
DNA content (pg) = genome size (bp) / (0.978 x 10<sup><font size="2">9</font></sup>)
1 pg = 978 Mb

The current estimates for human female and male diploid genome sizes are 6.406 × 10⁹ bp and 6.294 × 10⁹ bp, respectively. By using the conversion formulas given above, diploid human female and male nuclei in G₁ phase of the cell cycle should contain 6.550 and 6.436 pg of DNA, respectively.

See also

• Animal Genome Size Database
• Cell nucleus
• Comparative genomics
• C-value enigma
• Genome
• Genome size
• Human genome
• Junk DNA
• Noncoding DNA
• Plant DNA C-values Database
• Selfish DNA
• Transposable elementsashkan

External links

• Animal Genome Size Database
• Plant DNA C-values Database
• Fungal Genome Size Database