Difference between revisions of "Programing - homework"
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imported>SeongEon Park (Created page with "<p><strong>1. Install and learn bioperl</strong></p> <p><strong>2. Make a perl grogram translating 'all' combinations of triple bases into amino acids</strong></...") |
imported>SeongEon Park |
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<p><strong>[[4. Open and re-write one FASTA file containing one protein sequence of TERT]]</strong></p> | <p><strong>[[4. Open and re-write one FASTA file containing one protein sequence of TERT]]</strong></p> | ||
| − | <p><strong>[[5. Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file</strong> | + | <p><strong>[[5. Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file]]</strong></p> |
<p><strong>[[6. In a multi-sequence FASTA file, produce statistics such as sequenec number, average seq length, GC content, AT content. etc]]</strong></p> | <p><strong>[[6. In a multi-sequence FASTA file, produce statistics such as sequenec number, average seq length, GC content, AT content. etc]]</strong></p> | ||
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<p><strong>[[9. Create a flat text file database of protein sequences with hash function in Perl]]</strong></p> | <p><strong>[[9. Create a flat text file database of protein sequences with hash function in Perl]]</strong></p> | ||
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| + | <p> </p> | ||
<p> </p> | <p> </p> | ||
Revision as of 01:36, 8 June 2017
2. Make a perl grogram translating 'all' combinations of triple bases into amino acids
4. Open and re-write one FASTA file containing one protein sequence of TERT
5. Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file
7. Align two protein sequence using a dynamic programming method in Perl
8. Randomly generate five 100 AA long protein sequences and store them in a FASTA file
9. Create a flat text file database of protein sequences with hash function in Perl
