Difference between revisions of "Homework in the bioinformatics class"

Latest revision as of 19:20, 27 May 2017

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-<p>[[ Homework&nbsp;1. Make a Perl program translating &#39;all&#39; combinations of triple bases into amino acids]]<br />
+<p>[[ Homework&nbsp;1. Make a Perl program translating &#39;all&#39; combinations of triple bases into amino acids]]</p>
-[[ Homework 2. Pick 5 protein sequences and predict their secondary structures using available prediction programs]]</p>
+<p>[[ Homework 2. Pick 5 protein sequences and predict their secondary structures using available prediction programs]]</p>
+<p>[[ Homework 3. Open and re-write one FASTA file containing one protein sequence of TERT]]</p>
+<p>[[ Homework 4. Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file]]</p>
+<p>[[ Homework 5. Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file]]</p>
+<p>[[ Homework 6. In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc]]</p>
+<p>[[ Homework 7. Align two protein sequences using a dynamic programming method in Perl]]</p>
+<p>[[ Homework 8. Randomly generate five 100 AA long protein sequences and store them in a FASTA file]]</p>
+<p>[[ Homework 9. Create a flat text file database of protein sequences with hash function in Perl]]</p>
+<p>&nbsp;</p>
 <p>&nbsp;</p>