Difference between revisions of "Homework in the bioinformatics class"
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imported>YoungKwang Jung (Created page with "<p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p>[[Youngkwa...") |
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| − | <p> </p> | + | <p>[[ Homework 1. Make a Perl program translating 'all' combinations of triple bases into amino acids]]</p> |
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| + | <p>[[ Homework 2. Pick 5 protein sequences and predict their secondary structures using available prediction programs]]</p> | ||
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| + | <p>[[ Homework 3. Open and re-write one FASTA file containing one protein sequence of TERT]]</p> | ||
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| + | <p>[[ Homework 4. Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file]]</p> | ||
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| + | <p>[[ Homework 5. Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file]]</p> | ||
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| + | <p>[[ Homework 6. In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc]]</p> | ||
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| + | <p>[[ Homework 7. Align two protein sequences using a dynamic programming method in Perl]]</p> | ||
| − | <p> | + | <p>[[ Homework 8. Randomly generate five 100 AA long protein sequences and store them in a FASTA file]]</p> |
| − | <p> | + | <p>[[ Homework 9. Create a flat text file database of protein sequences with hash function in Perl]]</p> |
<p> </p> | <p> </p> | ||
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<p> </p> | <p> </p> | ||
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<p>[[Youngkwang_Jung_-_bioinformatics]]</p> | <p>[[Youngkwang_Jung_-_bioinformatics]]</p> | ||
Latest revision as of 19:20, 27 May 2017
Homework 1. Make a Perl program translating 'all' combinations of triple bases into amino acids
Homework 3. Open and re-write one FASTA file containing one protein sequence of TERT
Homework 5. Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file
Homework 7. Align two protein sequences using a dynamic programming method in Perl
Homework 8. Randomly generate five 100 AA long protein sequences and store them in a FASTA file
Homework 9. Create a flat text file database of protein sequences with hash function in Perl
