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Homework in the bioinformatics class

827 bytes added, 19:20, 27 May 2017
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<p>[[ Homework&nbsp;1. Make a Perl program translating &#39;all&#39; combinations of triple bases into amino acids]]<br /p<p>[[ Homework 2. Pick 5 protein sequences and predict their secondary structures using available prediction programs]]</p> <p>[[ Homework 3. Open and re-write one FASTA file containing one protein sequence of TERT]]</p> <p>[[ Homework 4. Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file]]</p> <p>[[ Homework 5. Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file]]</p> <p>[[ Homework 6. In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc]]</p> <p>[[ Homework 7. Align two protein sequences using a dynamic programming method in Perl]]</p> <p>[[ Homework 8. Randomly generate five 100 AA long protein sequences and store them in a FASTA file]]</p> <p>[[ Homework 9. Create a flat text file database of protein sequences with hash function in Perl]]</p> <p>&nbsp;</p>
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