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<p>131) <strong>Comparison of two high-throughput semiconductor chip sequencing platforms in noninvasive prenatal testing for Down syndrome in early pregnancy</strong></p> <p>Sunshin&nbsp;Kim&dagger;<a href="http://bmcmedgenomics.biomedcentral.com/articles/10.1186/s12920-016-0182-9#Aff1">¹</a>, HeeJung&nbsp;Jung&dagger;<a href="http://bmcmedgenomics.biomedcentral.com/articles/10.1186/s12920-016-0182-9#Aff2">²</a>, Sung&nbsp;Hee&nbsp;Han&dagger;<a href="http://bmcmedgenomics.biomedcentral.com/articles/10.1186/s12920-016-0182-9#Aff3">³</a>, SeungJae&nbsp;Lee<a href="http://bmcmedgenomics.biomedcentral.com/articles/10.1186/s12920-016-0182-9#Aff2">²</a>, JeongSub&nbsp;Kwon<a href="http://bmcmedgenomics.biomedcentral.com/articles/10.1186/s12920-016-0182-9#Aff2">²</a>, Min&nbsp;Gyun&nbsp;Kim<a href="http://bmcmedgenomics.biomedcentral.com/articles/10.1186/s12920-016-0182-9#Aff4">⁴</a>, Hyungsik&nbsp;Chu<a href="http://bmcmedgenomics.biomedcentral.com/articles/10.1186/s12920-016-0182-9#Aff5">⁵</a>, Hongliang&nbsp;Chen<a href="http://bmcmedgenomics.biomedcentral.com/articles/10.1186/s12920-016-0182-9#Aff6">⁶</a>, Kyudong&nbsp;Han<a href="http://bmcmedgenomics.biomedcentral.com/articles/10.1186/s12920-016-0182-9#Aff7">⁷</a>, Hwanjong&nbsp;Kwak<a href="http://bmcmedgenomics.biomedcentral.com/articles/10.1186/s12920-016-0182-9#Aff8">⁸</a>, Sunghoon&nbsp;Park<a href="http://bmcmedgenomics.biomedcentral.com/articles/10.1186/s12920-016-0182-9#Aff8">⁸</a>, Hee&nbsp;Jae&nbsp;Joo<a href="http://bmcmedgenomics.biomedcentral.com/articles/10.1186/s12920-016-0182-9#Aff8">⁸</a>, Byung&nbsp;Chul&nbsp;Kim<a href="http://bmcmedgenomics.biomedcentral.com/articles/10.1186/s12920-016-0182-9#Aff9">⁹</a>&nbsp;and Jong&nbsp;Bhak<a href="http://bmcmedgenomics.biomedcentral.com/articles/10.1186/s12920-016-0182-9#Aff1">¹</a>^,<a href="http://bmcmedgenomics.biomedcentral.com/articles/10.1186/s12920-016-0182-9#Aff9">⁹</a>^,<a href="http://bmcmedgenomics.biomedcentral.com/articles/10.1186/s12920-016-0182-9#Aff10">¹⁰</a>^{, 1}</p> <p><em>BMC Medical Genomics</em>, BMC series &ndash; open, inclusive and trusted 2016 <strong>9</strong>:22,&nbsp; <strong>DOI: </strong>10.1186/s12920-016-0182-9 &copy; &nbsp;Kim et al.&nbsp;2016,&nbsp; <strong>Received: </strong>30&nbsp;September&nbsp;2015 <strong>Accepted: </strong>18&nbsp;April&nbsp;2016 <strong>Published: </strong>30&nbsp;April&nbsp;2016</p> <p>&nbsp;</p> <p>130)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:DUFsPKDdMi0C">Genomic legacy of the African cheetah, Acinonyx jubatus</a>&nbsp;P Dobrynin, S Liu, G Tamazian, Z Xiong, AA Yurchenko, ...&nbsp;Genome biology 16 (1), 1-20</p> <p>&nbsp;</p> <p>129)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:9tXw7Op4-u0C">Characterization of cetacean Numt and its application into cetacean phylogeny</a>&nbsp;YJ Ko, EC Yang, JH Lee, KW Lee, JY Jeong, K Park, O Chung, J Bhak, ...</p> <p>Genes &amp; Genomics 37 (12), 1061-1071</p> <p>&nbsp;</p> <p>128)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:lRPiJ3GhvscC">The first whole genome and transcriptome of the cinereous vulture reveals adaptation in the gastric and immune defense systems and possible convergent evolution between the Old and New World vultures</a></p> <p>O Chung, S Jin, YS Cho, J Lim, H Kim, S Jho, HM Kim, JH Jun, HJ Lee, ...</p> <p>Genome biology 16 (1), 1-11</p> <p>&nbsp;</p> <p>127)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:kvJssbFybhEC">Ancient Ethiopian genome reveals extensive Eurasian admixture throughout the African continent</a>&nbsp;MG Llorente, ER Jones, A Eriksson, V Siska, KW Arthur, JW Arthur, ...</p> <p>Science 350 (6262), 820-822</p> <p>&nbsp;</p> <p>126)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:BFa5h04uPMwC">SLC15A2 genomic variation is associated with the extraordinary response of sorafenib treatment: whole-genome analysis in patients with hepatocellular carcinoma.</a></p> <p>YS Lee, BH Kim, BC Kim, A Shin, JS Kim, SH Hong, JA Hwang, JA Lee, ...</p> <p>Oncotarget 5</p> <p>&nbsp;</p> <p>125)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:ynsZFq2pu0MC">HEpD: A database describing epigenetic differences between Thoroughbred and Jeju horses</a>&nbsp;JA Gim, S Lee, DS Kim, KS Jeong, CP Hong, JH Bae, JW Moon, YS Choi, ...</p> <p>Gene 560 (1), 83-88</p> <p>&nbsp;</p> <p>124)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:jKT558fuBk8C">Genome-Wide Analysis of DNA Methylation before-and after Exercise in the Thoroughbred Horse with MeDIP-Seq</a>&nbsp;JA Gim, CP Hong, DS Kim, JW Moon, Y Choi, J Eo, YJ Kwon, JR Lee, ...</p> <p>Molecules and cells 38 (3), 210</p> <p>&nbsp;</p> <p>123)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:hB2aVRuWZNwC">Whole genome sequencing of an ethnic Pathan (Pakhtun) from the north-west of Pakistan</a>&nbsp;M Ilyas, JS Kim, J Cooper, YA Shin, HM Kim, YS Cho, S Hwang, H Kim, ...</p> <p>BMC genomics 16 (1), 172</p> <p>&nbsp;</p> <p>122)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:mVC4hKzE2FoC">HExDB: a database for epigenetic changes occurring after horse exercise</a>&nbsp;JA Gim, S Lee, DS Kim, KS Jeong, CP Hong, JH Bae, JW Moon, YS Choi, ...</p> <p>Genes &amp; Genomics 37 (3), 287-294</p> <p>&nbsp;</p> <p>121)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:IHkkN1K1AlAC">Insights into the evolution of longevity from the bowhead whale genome</a>&nbsp;M Keane, J Semeiks, AE Webb, YI Li, V Quesada, T Craig, LB Madsen, ...</p> <p>Cell reports 10 (1), 112-122</p> <p>&nbsp;</p> <p>120)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:oFn-K-OQSCAC">O-033: SLC15A2 Genomic Variation Is Associated with the Extraordinary Response of Sorafenib Treatment: Whole-genome Analysis in Patients with Hepatocellular Carcinoma</a></p> <p>BH Kim, BC Kim, JS Kim, JA Hwang, S Nam, J Bhak</p> <p>THE LIVERWEEK 2015 (1), 37-37</p> <p>&nbsp;</p> <p>119)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:1_W9tMSvGuwC">Profiling Age-Related Epigenetic Markers of Stomach Adenocarcinoma in Young and Old Subjects</a>&nbsp;BC Kim, HO Jeong, D Park, CH Kim, EK Lee, DH Kim, E Im, ND Kim, ...</p> <p>Cancer informatics 14, 47</p> <p>&nbsp;</p> <p>118)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:vjZqxyZ7hS4C">Whole-genome analysis of a patient with early-stage small-cell lung cancer</a>&nbsp;JY Han, YS Lee, BC Kim, GK Lee, S Lee, EH Kim, HM Kim, J Bhak</p> <p>The pharmacogenomics journal 14 (6), 503-508</p> <p>&nbsp;</p> <p>117)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:GiYFt9mpioMC">The feasibility study of non-invasive fetal trisomy 18 and 21 detection with semiconductor sequencing platform</a></p> <p>YJ Jeon, Y Zhou, Y Li, Q Guo, J Chen, S Quan, A Zhang, H Zheng, X Zhu, ...</p> <p>&nbsp;</p> <p>116)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:5LPo_wSKItgC">Genome-wide analysis of DNA methylation patterns in horse</a></p> <p>JR Lee, CP Hong, JW Moon, YD Jung, DS Kim, TH Kim, JA Gim, JH Bae, ...</p> <p>BMC genomics 15 (1), 598</p> <p>&nbsp;</p> <p>115)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:-38epGy1wY0C">New Lung Cancer Panel for High-Throughput Targeted Resequencing</a></p> <p>EH Kim, S Lee, J Park, K Lee, J Bhak, BC Kim</p> <p>Genomics &amp; informatics 12 (2), 50-57</p> <p>&nbsp;</p> <p>114)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:s1ouQE5r0WUC">OR12-1: Whole-Exome Sequencing Reveals Strong Genetic Predictors of Antithyroid Drugs Induced Agranulocytosis</a></p> <p>SG Park, J Bhak, JS Kim, TH Kim, JH An, SY Rhee, HK Kim, MJ Kim, ...</p> <p>&nbsp;</p> <p>113)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:GtqhT-R7ZnwC">Identification and characterization of microRNAs in normal Equine tissues by Next Generation Sequencing</a>&nbsp;MC Kim, SW Lee, DY Ryu, FJ Cui, J Bhak, Y Kim</p> <p>PloS one 9 (4), e93662</p> <p>&nbsp;</p> <p><strong>112) </strong><a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;cstart=20&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:nU66GSXDKhoC">Genomic profile analysis of diffuse-type gastric cancers</a>&nbsp;YS Lee, YS Cho, GK Lee, S Lee, YW Kim, S Jho, HM Kim, SH Hong, ...</p> <p>Genome Biol 15 (4), R55</p> <p>&nbsp;</p> <p><strong>&nbsp;</strong></p> <p>111)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;cstart=20&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:U5uP8zs9lfgC">Minke whale genome and aquatic adaptation in cetaceans</a></p> <p>HS Yim, YS Cho, X Guang, SG Kang, JY Jeong, SS Cha, HM Oh, JH Lee, ...</p> <p>Nature genetics 46 (1), 88-92</p> <p>&nbsp;</p> <p>110)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;cstart=20&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:4QKQTXcH0q8C">Whole genome sequence and analysis of the Marwari horse breed and its genetic origin</a></p> <p>JH Jun, YS Cho, H Hu, HM Kim, S Jho, P Gadhvi, KM Park, J Lim, ...</p> <p>BMC genomics 15 (Suppl 9), S4</p> <p>&nbsp;</p> <p>109) &nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;cstart=20&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:vD2iS2Kej30C">PPP1R1B-STARD3 chimeric fusion transcript in human gastric cancer promotes tumorigenesis through activation of PI3K/AKT signaling</a></p> <p>SM Yun, K Yoon, S Lee, E Kim, SH Kong, J Choe, JM Kang, TS Han, ...</p> <p>Oncogene</p> <p>&nbsp;</p> <p>108&nbsp;)&nbsp;&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;cstart=20&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:dFKc6_kCK1wC">Whole genome comparison of donor and cloned dogs</a></p> <p>HM Kim, YS Cho, H Kim, S Jho, B Son, JY Choi, S Kim, BC Lee, J Bhak, ...</p> <p>Scientific reports 3</p> <p>&nbsp;</p> <p>107)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;cstart=20&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:J4E9jCG1tHUC">The tiger genome and comparative analysis with lion and snow leopard genomes</a></p> <p>YS Cho, L Hu, H Hou, H Lee, J Xu, S Kwon, S Oh, HM Kim, S Jho, S Kim, ...</p> <p>Nature communications 4</p> <p>&nbsp;</p> <p>&nbsp;</p> <p>&nbsp;</p> <p><strong>106) </strong>iAnn: An Event Sharing Platform for the Life Sciences.</p> <p>Jimenez RC, Albar JP, <strong>Bhak J</strong>, Blatter MC, Blicher T, Brazas MD, Brooksbank C, Budd A, De Las Rivas J, Dreyer J, van Driel MA, Dunn MJ, Fernandes PL, van Gelder CW, Hermjakob H, Ioannidis V, Judge DP, Kahlem P, Korpelainen E, Kraus HJ, Loveland J, Mayer C, McDowall J, Moran F, Mulder N, Nyronen T, Rother K, Salazar GA, Schneider MV, Schneider R, Via A, Villaveces JM, Yu P, Attwood TK, Corpas M.</p> <p>Bioinformatics. 2013 Jun 5. [Epub ahead of print]</p> <p><strong>&nbsp;</strong></p> <p><strong>105) </strong>Comprehensive genome- and transcriptome-wide analyses of mutations associated with microsatellite instability in Korean gastric cancers.</p> <p>Yoon K, Lee S, Han TS, Moon SY, Yun SM, Kong SH, Jho S, Choe J, Yu J, Lee HJ, Park JH, Kim HM, Lee SY, Park J, Kim WH, <strong>Bhak J</strong>, Yang HK, Kim SJ.</p> <p>Genome Res. 2013 Jun 4.</p> <p><strong>&nbsp;</strong></p> <p><strong>104) </strong>The genetic basis of white tigers.</p> <p>Xu X, Dong GX, Hu XS, Miao L, Zhang XL, Zhang DL, Yang HD, Zhang TY, Zou ZT, Zhang TT, Zhuang Y<strong>, Bhak J</strong>, Cho YS, Dai WT, Jiang TJ, Xie C, Li R, Luo SJ.</p> <p>Curr Biol. 2013 Jun 3;23(11):1031-5. doi: 10.1016/j.cub.2013.04.054. Epub 2013 May 23.</p> <p><strong>&nbsp;</strong></p> <p><strong>103) </strong>Peeling back the evolutionary layers of molecular mechanisms responsive to exercise-stress in the skeletal muscle of the racing horse.</p> <p>Kim H, Lee T, Park W, Lee JW, Kim J, Lee BY, Ahn H, Moon S, Cho S, Do KT, Kim HS, Lee HK, Lee CK, Kong HS, Yang YM, Park J, Kim HM, Kim BC, Hwang S, <strong>Bhak J</strong>, Burt D, Park KD, Cho BW, Kim H.</p> <p>DNA Res. 2013;20(3):287-98. doi: 10.1093/dnares/dst010. Epub 2013 Apr 11.</p> <p>&nbsp;</p> <p>&nbsp;</p> <p>&nbsp;</p> <p>&nbsp;</p> <p>&nbsp;</p> <p><strong><strong>102)</strong>Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq Park KD,&nbsp;Park J,&nbsp;</strong><strong>Ko J,&nbsp;Kim BC,&nbsp;Kim HS,&nbsp;Ahn K,&nbsp;Do KT,&nbsp;Choi H,&nbsp;Kim HM,&nbsp;Song S,&nbsp;Lee S,&nbsp;Jho S,&nbsp;Kong HS,&nbsp;Yang YM,&nbsp;Jhun BH,&nbsp;Kim C,Kim TH,&nbsp;Hwang S,&nbsp;Bhak&nbsp;J,&nbsp;Lee HK,&nbsp;Cho BW.</strong></p> <p><strong>&nbsp;</strong></p> <p><strong>&nbsp;</strong></p> <p><strong>101) A public resource facilitating clinical use of genomes. </strong><strong><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Ball%20MP%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Ball MP,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Thakuria%20JV%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Thakuria JV,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Zaranek%20AW%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Zaranek AW,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Clegg%20T%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Clegg T,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Rosenbaum%20AM%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Rosenbaum AM,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Wu%20X%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Wu X,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Angrist%20M%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Angrist M,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Bhak%20J%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Bhak J,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Bobe%20J%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Bobe J,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Callow%20MJ%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Callow MJ,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Cano%20C%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Cano C,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Chou%20MF%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Chou MF,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Chung%20WK%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Chung WK,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Douglas%20SM%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Douglas SM,</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Estep%20PW%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Estep PW,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Gore%20A%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Gore A,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Hulick%20P%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Hulick P,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Labarga%20A%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Labarga A,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Lee%20JH%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Lee JH,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Lunshof%20JE%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Lunshof JE,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Kim%20BC%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Kim BC,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Kim%20JI%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Kim JI,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Li%20Z%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Li Z,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Murray%20MF%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Murray MF,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Nilsen%20GB%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Nilsen GB,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Peters%20BA%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Peters BA,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Raman%20AM%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Raman AM,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Rienhoff%20HY%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Rienhoff HY,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Robasky%20K%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Robasky K,</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Wheeler%20MT%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Wheeler MT,&nbsp;</a><a 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Reja R, Venkatakrishnan AJ, Lee J, Kim BC, Ryu JW, Gong S,<strong> Bhak J*</strong>, and &nbsp;Park D*. <em>BMC Genomics</em> 2009, 10(Suppl 3):S20 (3 December 2009).<br /> <br /> 82) <strong>PutidaNET: Interactome database service and network analysis of Pseudomonas putida KT2440</strong>.Park SJ, Choi JS, Kim BC, Jho SW, Ryu JW, Park D, Lee KA, <strong>Bhak J*</strong>, and Kim SI*. <em>BMC Genomics</em> 2009, 10(Suppl 3):S18 (3 December 2009).<br /> <br /> 81) <strong>The Korean Bird Information System (KBIS) through open and public participation</strong>.&nbsp;Paik IH, Lim J, Chun BS, Jin SD, Yu JP, Lee JW, <strong>Bhak J</strong>, and Paek WK. <em>BMC Bioinformatics</em> 2009, 10(Suppl 15):S11 (3 December 2009).<br /> <br /> 80) <strong>Gevab: a prototype genome variation analysis browsing server</strong>. Kim WY, Kim SY, Kim TH, Ahn SM, Byun HN, Kim D, Kim DS, Lee YS, Ghang H, Park D, Kim BC, Kim C, Lee S, Kim SJ, and <strong>Bhak J*</strong><strong>.</strong> <em>BMC Bioinformatics</em> 2009, 10(Suppl 15):S3 (3 December 2009).&nbsp;</p> <p>79) <strong>MitoVariome: a variome database of human mitochondrial DNA</strong>. Lee YS, Kim WY, Ji M, Kim JH, and <strong>Bhak J*</strong><strong>.</strong> <em>BMC Genomics</em> 2009, 10(Suppl 3):S12 (3 December 2009).<br /> <br /> 78)<strong> COMUS: Clinician-Oriented locus-specific MUtation detection and deposition System</strong>.<br /> Jho S, Kim BC, Ghang H, Kim JH, Park D, Kim HM, Jung S, Yoo K, Kim HJ, Lee S, and <strong>Bhak J*</strong>. <em>BMC Genomics</em> 2009, 10(Suppl 3):S35 (3 December 2009).<br /> <br /> 77)<strong> BioBarcode: a general DNA barcoding database and server platform for Asian biodiversity resources</strong>.Lim J, Kim SY, Kim S, Eo HS, Kim CB, Paek WK, Kim W*, and <strong>Bhak J*</strong>. <em>BMC Genomics 2009</em>, 10(Suppl 3):S8 (3 December 2009).<br /> <br /> 76)<strong> ssSNPTarget: Genome-Wide Splice-Site Single Nucleotide Polymorphism Database</strong>. Ok Yang J, Kim WY, and <strong>Bhak J</strong>. <em>Human mutation, 2009 Sep. 16th, </em>PMID: 19760752.<br /> <br /> 75)<strong> The first Korean genome sequence and analysis: Full genome sequencing for a socio-ethnic group</strong>. Sung-Min Ahn, Tae-Hyung Kim, Sunghoon Lee, Deokhoon Kim, Ho Ghang, Daesoo Kim, Byoung-Chul Kim, Sang-Yoon Kim, Woo-Yeon Kim, Chulhong Kim, Daeui Park, Yong Seok Lee, Sangsoo Kim, Rohit Reja, Sungwoong Jho, Chang Geun Kim, Ji-Young Cha, Kyung-Hee Kim, Bonghee Lee, <strong>Jong Bhak*</strong>, and Seong-Jin Kim*. <em>Genome Research</em>, May 26, 2009. PMID: 19470904.<br /> <br /> 74) <strong>Planning the Human Variome Project: The Spain report</strong>. Kaput J, Cotton RG, Hardman L, Watson M, Al Aqeel AI, Al-Aama JY, Al-Mulla F, Alonso S, Aretz S, Auerbach AD, Bapat B, Bernstein IT, <strong>Bhak J</strong>, Bleoo SL, Bl&ouml;cker H, Brenner SE, Burn J, Bustamante M, Calzone R, Cambon-Thomsen A, Cargill M, Carrera P, Cavedon L, Cho YS, Chung YJ, Claustres M, Cutting G, Dalgleish R, den Dunnen JT, D&iacute;az C, Dobrowolski S, Dos Santos MR, Ekong R, Flanagan SB, Flicek P, Furukawa Y, Genuardi M, Ghang H, Golubenko MV, Greenblatt MS, Hamosh A, Hancock JM, Hardison R, Harrison TM, Hoffmann R, Horaitis R, Howard HJ, Barash CI, Izagirre N, Jung J, Kojima T, Laradi S, Lee YS, Lee JY, Gil-da-Silva-Lopes VL, Macrae FA, Maglott D, Marafie MJ, Marsh SG, Matsubara Y, Messiaen LM, M&ouml;slein G, Netea MG, Norton ML, Oefner PJ, Oetting WS, O&#39;Leary JC, de Ramirez AM, Paalman MH, Parboosingh J, Patrinos GP, Perozzi G, Phillips IR, Povey S, Prasad S, Qi M, Quin DJ, Ramesar RS, Richards CS, Savige J, Scheible DG, Scott RJ, Seminara D, Shephard EA, Sijmons RH, Smith TD, Sobrido MJ, Tanaka T, Tavtigian SV, Taylor GR, Teague J, T&ouml;pel T, Ullman-Cullere M, Utsunomiya J, van Kranen HJ, Vihinen M, Webb E, Weber TK, Yeager M, Yeom YI, Yim SH, Yoo HS; on behalf of contributors to the Human Variome Project Planning Meeting. Hum Mutat. 2009 March 20; 30(4):496-510.&nbsp; PMID: 19306394 [PubMed - indexed for MEDLINE].<br /> <br /> 73) <strong>Kinetics of Zn2+ -induced Brain Type Creatine Kinase Unfolding and Aggregation</strong>. Mu H, L&uuml; ZR, Park D, Kim BC, <strong>Bhak J</strong>, Zou F, Yang JM, Li S, Park YD, Zou HC, Zhou HM. <em>Appl Biochem Biotechnol</em>. 2009 Mar 11.<br /> <br /> 72) <strong>Profiling the dysregulated genes of keratinocytes in atopic dermatitis patients: cDNA microarray and interactomic analyses</strong>. L&uuml; ZR, Park D, Lee KA, Ryu JW, <strong>Bhak J</strong>, Shi L, Lee DY, Park YD, Zou F, Yang JM. J Dermatol Sci. 2009 Jan 19.</p> <p>71) <strong>The effects of acrylamide on brain creatine kinase: Inhibition kinetics and computational docking simulation</strong>. Zhi-Rong L&uuml;a, He-Chang Zou, Seong Jin Park, Daeui Park, Long Shi, Sang Ho Oh, Yong-Doo Park, <strong>Jong Bhak</strong><strong>,</strong> and Fei Zou, INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2009, 44(2):128-132.<br /> <br /> 70) <strong>Dysregulated genes of extrinsic type of atopic dermatitis: 34K microarray and interactomic analyses</strong>. Zhi-Rong L&uuml;1, a, Tae-Ho Park1, b, Eil-Soo Leec, Kea-Jeung Kimb, Daeui Parkd, Byoung-Chul Kim, Seong-Woong Chod, <strong>Jong Bhak</strong>, Yong-Doo Park, Fei Zoua, and Jun-Mo Yang. <em>Journal of Dermatological Science</em>, 2009, 53(2):146-165.<br /> <br /> <strong>69) Personal Genomics, Bioinformatics, and Variomics</strong>. <strong>Jong Bhak</strong>, Ho Ghang, Rohit Reja, and Sangsoo Kim. <em>Genomics &amp; Informatics</em>, 2008, 6(4):161-165.<br /> <br /> 68) <strong>An integrated korean biodiversity and genetic information retrieval system</strong>. Jeongheui Lim, <strong>Jong Bhak</strong>, Hee-Mock Oh, Chang-Bae Kim, Yong-Ha Park, and Woon Kee Paek. <em>BMC Bioinformatics</em>, 2008, 9(12):S24.<br /> <br /> 67) <strong>An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases</strong>. Jin Ok Yang, Sohyun Hwang, Jeongsu Oh, <strong>Jong Bhak</strong><strong>,</strong> and Tae-Kwon Sohn. <em>BMC Bioinformatics</em>, 2008, 9(12):S19.<br /> <br /> 66) <strong>Prediction and evaluation of protein-protein interaction in keratinocyte differentiation.</strong> Hyun Kyung Yoon, Kyung-Cheol Sohn, Jung-Suk Lee, Yu Jin Kim, <strong>Jong Bhak</strong>, Jun-Mo Yang, Kwan-Hee You, Chang-Deok Kim, Jeung-Hoon Lee. <em>BBRC</em>, 2008,377(2):662-667.<br /> <br /> 65) <strong>Transcriptome analysis and identification of regulators for long-term plasticity in Aplysia kurodai</strong>. Yong-seok Lee, Sun-Lim Choi, Tae-Hyung Kim, Jin-A Lee, Hyong Kyu Kim, Hyoung Kim, Deok-Jin Jang, Jennifer J. Lee, Sunghoon Lee, Gwang Sik Sin, Chang-Bae Kim, Yutaka Suzuki, Sumio Sugano, Tai Kubo, Leonid L. Moroz, Eric R. Kandel, <strong>Jong Bhak</strong><strong>,</strong> and Bong-Kiun Kaang. <em>PNAS</em>, 2008, 105(47):18602-18607.<br /> <br /> 64) <strong>The Effect of Histidine Residue Modification on Tyrosinase Activity and Conformation: Inhibition Kinetics and Computational Prediction</strong>. Lin Gou, Zhi-Rong Lu, Daeui Park, Sang Ho Oh, Long Shi, Seong Jin Park, <strong>Jong Bhak</strong>, Yong-Doo Park, Zhen-Long Ren and Fei Zou. <em>Journal of Biomolecular Structure &amp; Dynamics</em>, 2008, 26(3):395-401.<br /> <br /> 63) <strong>Structural Bioinformatics Analysis of Disease-related Mutations</strong>. Seong-Jin Park, Sangho Oh, Daeui Park and <strong>Jong Bhak</strong>. <em>Genomics &amp; Informatics</em>, 2008(September), 6(3):142-146.<br /> <br /> 62) <strong>Identification of gene-related Korean patents and construction of a database sever for Korean patent sequences</strong>. Byungwook Lee, Seon Kyu Kim, Tae Hyung Kim, Sangsoo Kim, Gee Chan Ryu and <strong>Jong Bhak</strong>. <em>BIOTECHNOLOGY AND BIOPROCESS ENGINEERING</em>, 2008, 13(2):248-251.<br /> <br /> 61) <strong>MassNet: a functional annotation service for protein mass spectrometry data</strong>. Daeui Park, Byoung-chul Kim, Seong-Woong Cho, Seong-Jin Park, Jong-Soon Choi, Seung Il Kim, <strong>Jong Bhak</strong><strong>,</strong> and Sunghoon Lee. <em>Nucleic Acids Research</em>, 2008, 1-5.<br /> <br /> 60) <strong>Cyanobacterial hybrid kinase SLL0043 regulates phototaxis by suppressing pilin and twitching motility protein</strong>. Bong-Jeong Shin, Jeehyun Oh, Sungsoo Kang, Young-Ho Chung, Young Mok Park, Young Hwan Kim, Seungil Kim, <strong>Jong Bhak</strong><strong>,</strong> and Jong-Soon Choi. <em>JOURNAL OF MICROBIOLOGY</em>, 2008, 46(3):300-308.<br /> <br /> 59) <strong>Automatic synthronization and distribution of biological databases and software over low-bandwidth networks among developing countries</strong>. Unitsa Sangket, Amornrat Phongdara, Wilaiwan Chotigeat, Darran Nathan, Woo-Yeon Kim, <strong>Jong Bhak</strong>, Chumpol Ngamphiw, Sissades Tongsima, Asif M. Khan, Honghuang Lin, and Tin Wee Tan. <em>Bioinformatics</em>, 2008, 24(2):299-301.<br /> <br /> 58) <strong>Pocket extraction on proteins via the Voronoi diagram of spheres</strong>. Donguk Kim, Cheol-Hyung Cho, Youngsong Cho, Joonghyun Ryu, <strong>Jonghwa Bhak</strong><strong>,</strong> and Deok-Soo Kim. <em>Journal of Molecular Graphics &amp; Modelling</em>, 2008, 26(7):1104-1112. (SCI)<br /> <br /> 57) <strong>Predicting the Interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service</strong>. Jeong-Gu Kim, Daeui Park, Byoung-Chul Kim, Seong-Woong Cho, Yeong Tae Kim, Young-Jin Park, Hee Jung Cho, Hyunseok Park, Ki-Bong Kim, Kyong-Oh Yoon, Soo-Jun Park, Byoung-Moo Lee and <strong>Jong Bhak</strong>. BMC Bioinformatics, 2008, 9:41.<br /> <br /> 56) <strong>SNP@Promoter: A database of human SNPs (Single Nucleotide Polymorphisms) within putative promoter region</strong>. Byoung-Chul Kim, Woo-Yeon Kim, Daeui Park, Won-Hyong Chung, Kwang-sik Shin and <strong>Jong Bhak</strong>*. BMC Bioinformatics, 13 Feb. 2008, 9:S1-S2.<br /> <br /> 55) <strong>SynechoNET: integrated protein-protein interaction database of a model cyanobacterium /Synechocystis/ sp. PCC 6803</strong>. Woo-Yeon Kim*, Sungsoo Kang*, Byoung-Chul Kim, Jeehyun Oh, Seongwoong Cho, <strong>Jong Bhak</strong>&sect; , and Jong-Soon Choi&sect;. BMC Bioinformatics, 13 Feb. 2008, 9:S1-S20.<br /> <br /> 54) <strong>Proteomic approaches to the analysis of atopic dermatitis and new insights from interactomics</strong>. Yong-Doo Park, Daeui Park, <strong>Jong Bhak</strong> and Jun-Mo Yang, PROTEOMICS - CLINICAL APPLICATIONS, 2008, 2(3):290-300 (2008 Annual Reviews issue).<br /> <br /> 53) <strong>Multi-resolution protein model</strong>. Deok-Soo Kim , Bohyung Lee , Chung-In Won , Donguk Kim, Joonghyun Ryu , Youngsong Cho, Chong-Min Kim, Sung-Hoon Lee, and <strong>Jonghwa Bhak</strong>. LECTURE NOTES IN COMPUTER SCIENCE, 2007, 4706(2):639-652.<br /> <br /> 52) <strong>GS2PATH: A web-based integrated analysis tool for finding functional relationships using gene ontology and biochemical pathway data</strong>. Jin Ok Yang, Charny Park, Byungwook Lee, Sangsoo Kim, <strong>Jong Bhak</strong>*, and Hyun Goo Woo. Bioinformation, Dec. 30, 2007, 2(5):194-196.<br /> <br /> 51) <strong>Biological Object Downloader (BOD) Service for Easy Download and Management of Biological Databases</strong>. Daeui Park, Jungwoo Lee, Giseok Yoon, Sungsam Gong, and <strong>Jong Bhak</strong>. Genomics &amp; Informatics, Dec. 2007, 5(4):196-199.<br /> <br /> 50) <strong>CONSORF: a consensus prediction system for prokaryotic coding sequences</strong>. Sungsoo Kang, Sung-Jin Yang, Sangsoo Kim*, and <strong>Jong Bhak</strong>*. Bioinformatics, 8 Oct. 2007, 23(22):3088-3090.<br /> <br /> 49) <strong>Genomic Distribution of Simple Sequence Repeats in <em>Brassica rapa</em></strong>. Chang Pyo Hong, Zhong Yun Piao, Tae Wook Kang, Jacqueline Batley, Tae-Jin Yang, Yoon-Kang Hur, <strong>Jong Bhak</strong>, Beom-Seok Park, David Edwards, and Yong Pyo Lim. Mol. Cells, 6 March 2007, 23(3):349-356.<br /> <br /> 48) <strong>Impact of Transcriptional Properties on Essentiaity and Evolutionary Rate</strong>. Jung Kyoon Choi, Sang Cheol Kim, Jungmin Seo, Sangsoo Kim and <strong>Jong Bhak</strong>, Genetics, January 2007, 175:199-206.<br /> <br /> 47) <strong>Sequence-level analysis of the diploidization process in the triplicated FLOWERING LOCUS C region of <em>Brassica rapa</em></strong>. Yang TJ, Kim JS, Kwon SJ, Lim KB, Choi BS, Kim JA, Jin M, Park JY, Lim MH, Kim HI, Lim YP, Kang JJ, Hong JH, Kim CB, <strong>Bhak J</strong>, Bancroft I, Park BS. Plant Cell, 2006, 18(6):1339-1347.<br /> <br /> 46) <strong>Parameter selection of pocket extraction algorithm using interaction interface</strong>. Kim Chong-Min, Won Chung-In, Ryu Joonghyun, Cho Cheol-Hyung, <strong>Bhak Jonghwa</strong><strong>,</strong> and Kim Deok-Soo. September 2006, Journal of Zhejiang University - Science A, 7(9):1492-1499.<br /> <br /> 45) <strong>BioCC: An Openfree Hypertext Bio Community Cluster for Biology</strong>. Sungsam Gong, TaeHyung Kim, Jungsu Oh, Jekeun Kwon, SuAn Cho, Dan Bolser and <strong>Jong Bhak</strong>. Genomics &amp; Informatics, September 2006, 4(3):125-128.<br /> <br /> 44) <strong>Localizome: a server for identifying transmembrane topologies and TM helices of eukaryotic proteins utilizing domain information</strong>. Sunghoon Lee, Byungwook Lee, Insoo Jang, Sangsoo Kim and <strong>Jong Bhak</strong>. Nucleic Acids Research, April 19, 2006, 34:W99-W103. (ISSN:0305-1048)<br /> <br /> 43) <strong>Functional Annotation and Analysis of Korean Patented Biological Sequences Using Bioinformatics</strong>. Byung Wook Lee, Tae Hyung Kim, Seon Kyu Kim, Sang Soo Kim, Gee Chan Ryu, and <strong>Jong Bhak</strong>. Mol. Cells, March 2006, 21(2):269-275.<br /> <br /> 42) <strong>HExDB: Human EXon DataBase for Alternative Splicing Pattern Analysis and predicted human gene number</strong>. Junghwan Park, Minho Lee, Tae Hyung Kim, <strong>Jong Bhak</strong>, Genomics &amp;Informatics, September 2005, 3(3):112-117.<br /> <br /> 41) <strong>A protein domain interaction interface database: InterPare</strong>. Sungsam Gong, Changbum Park, Hansol Choi, Junsu Ko, Insoo Jang, Jungsul Lee, Dan M. Bolser, Donghoon Oh, Deok-Soo Kim, and <strong>Jong Bhak</strong>. BMC bioinformatics, 2005, 6:207. (ISSN:1471-2105)<br /> <br /> 40) <strong>Euclidean Voronoi diagrams of 3D sphereds and applications to protein structure analysis</strong>. Deok-Soo KIM, Youngsong CHO, Donguk KIM, Sangsoo KIM, <strong>Jonghwa BHAK</strong> and Sung-Hoon LEE. Japan Journal of Industrial and Applied Mathematics, June 2005, 22(2):251-265. (ISSN:0916-7005)<br /> <br /> 39) <strong>BioCovi: A visualization service for comparative genomics analysis</strong>, Jungsul Lee, Daeui Park and <strong>Jong Bhak</strong>. Genomics &amp; Informatics, 2005, 3(2):52-54.<br /> <br /> 38) <strong>Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map)</strong>. Daeui Park, Semin Lee, Dan Bolser, Michael Schroeder, Michael Lappe, Donghoon Oh and <strong>Jong Bhak</strong>. Bioinformatics, May 2005, 21(15):3234-3240. (ISSN:1367-4803)<br /> <br /> 37) <strong>PSIbase: a database of protein structural interactome map (PSIMAP)</strong>. Sungsam Gong, Giseok Yoon Insoo Jang, Dan Bolser, Panos Dafas, Michael Schroeder, Hansol Choi, Yoobok Cho, Kyungsook Han, Sunghoon Lee, Hwanho Choi, Michael Lappe, Liisa Holm, Sangsoo Kim, Donghoon Oh, and <strong>Jonghwa Bhak</strong>. Bioinformatics, 2005, 21(10):2541-2543. (ISSN:1367-4803)<br /> <br /> 36) <strong>BioSubroutine: an open web server for bioinformatics algorithms and subroutines</strong>. Joowon Lee, Hana Kim, Wonhye Lee, Dongil Chung, and <strong>Jong Bhak</strong>. Genomics &amp; Informatics, March 2005, 3(1):35-38.<br /> <br /> 35) <strong>Architecture of Basic Building Blocks in Protein and Domain Structural Interaction Networks</strong>. Hyun S. Moon, <strong>Jonghwa Bhak</strong>, Kwang H. Lee and Doheon Lee, Bioinformatics, 2005, 21(8):1479-1486. (ISSN:1367-4803)<br /> <br /> 34) <strong>The association of Alu repeats with the generation of potential AU-rich elements (ARE) at 3&#39;untranslated regions</strong>. Hyeong Jun An, Doheon Lee, Kwang Hyung Lee and <strong>Jonghwa Bhak</strong>. BMC Genomics, 21 Dec. 2004, 5:97 p.1-5. (ISSN : 1471-2164)<br /> <br /> 33) <strong>The Atom of Evolution</strong>. <strong>Jonghwa Bhak</strong>, Dan Bolser, Daeui Park, Yoobok Cho, Kiesuk Yoon, Semin Lee, SungSam Gong, Insoo Jang, Changbum park, Maryana Huston, and Hwanho Choi. Genomics &amp; Informatics, December 2004, 2(4):167-173.<br /> <br /> 32) <strong>Using convex hulls to extract interaction interfaces from known structures</strong>. Panos Dafas, Dan Bolser, Jacek Gomoluch, <strong>Jong Park</strong><strong>,</strong> and Michael Schroeder. Bioinformatics, 2004, 20(10):1486-1490. (ISSN:1367-4803)<br /> <br /> 31) <strong>High correlation between Alu elements and the conversion of 3 UTR of mRNAs processed pseudogenes</strong>. Hyeong Jun An, Dokyun Na, Doheon Lee, Kwang Hyung Lee, and <strong>Jonghwa Bhak</strong>. Genomics &amp; Informatics, June 2004 , 2(2):86-91.<br /> <br /> 30) <strong>HPID: The Human Protein Interaction Database</strong>. Kyungsook Han, Byungkyu Park, Hyongguen Kim, Jinsun Hong and <strong>Jong Park</strong>. Bioinformatics, Apr. 29th, 2004, Vol. 20(15):2466-2470. (ISSN:1367-4803)<br /> <br /> 29) <strong>Large scale co-evolution analysis of Protein Structural Interlogues using the global Protein Structural Interactome Map(PSIMAP)</strong>.Wankyu Kim, Dan M. Bolser, and <strong>Jong Park</strong>. Bioinformatics, 2004 Feb. 5th, 20(7):1138-1150. (ISSN : 1367-4803, Impact Factor : 5.742)<br /> <br /> 28) <strong>Biological Network Evolution Hypothesis Applied to Protein Structural Interactome</strong>. Dan M. Bolser and <strong>Jong Park</strong>, Genomics &amp; Informatics, September 2003, Vol. 1(1) 7-19.<br /> <br /> 27) <strong>Challenges and New Approaches in Genomics and Bioinformatics</strong>. <strong>Jong Park</strong> and Kyungsook Han. Genomics &amp; Informatics, September 2003, Vol. 1(1) 1-6.<br /> <br /> 26) <strong>Visualisation and Graph-theoretic Analysis of a Large-scale Protein Structural Interactome</strong>. Dan M Bolser, Panos Dafas, Richard Harrington, <strong>Jong Park</strong><strong>,</strong> and Michael Schroeder. BMC Bioinformatics, 8 October 2003, 4;45 p.1-22. (ISSN:1471-2105)<br /> <br /> 25) <strong>Visualization and Analysis of Protein Interactions</strong>. Byonghyon Ju, Byungkyu Park, <strong>Jong P</strong><strong>ark</strong>, and Kyungsook Han. Bioinformatics, 2003, 19(2):317-318. (ISSN:1367-4803)<br /> <br /> 24) <strong>Predicting Protein Interactions in Human by Homologous Interactions in Yeast</strong>. Hyongguen Kim, <strong>Jong Park</strong> and Kyungsook Han. Lecture Notes in Computer Science, 2003, Vol.2637, 159-165. (ISSN:0302-9743)<br /> <br /> 23) <strong>Large Scale Statistical Prediction of Protein-Protein Interaction by Potentially Interacting Domain (PID) Pair</strong>. Wankyu Kim, <strong>Jong Park</strong><strong>,</strong> and Jungkeun Suh. Genome Informatics, 2002, 13: 42-50.<br /> <br /> 22) <strong>InterViewer: Dynamic Visualization of Protein-Protein Interactions</strong>. Kyungsook Han, Byonghyon Ju, and <strong>Jong Park</strong>. Lecture Notes in Computer Science, 2002, Vol.2528, 364-365. (ISSN:0302-9743)<br /> <br /> 21) <strong>Sequence similarity between stereocilin and otoancorin points to a unified mechanism for mechanotransduction in the mammalian inner ear</strong>. Luca Jovine, <strong>Jong Park</strong><strong>,</strong> and Paul M Wassarman. BMC Cell Biology, 2002, 3:28 (ISSN-NO:1471-2121)<br /> <br /> 20) <strong>Protein Interactions in the Whole Human Genome</strong>. Kyungsook Han, Byunggyu Park, Hyongguen Kim, Hongjin Kim, and <strong>Jong Park</strong>. Genome Informatics, 2002, Vol.13, 318-319 (Poster presentation).<br /> <br /> 19) <strong>An Integrated Bioinformatic Search Server: Sequences, Structure, Interaction, and Function of Proteins (SSIF) Server</strong>. Jaehyung Lee, Insong Koh, <strong>Jong Park</strong>. Genome Informatics, 2001, 12: 480-481.<br /> <br /> 18) <strong>Protein Classification Comparison Server</strong>. Junhyung Park, Sungryong Ryu, Cheolmin Kim, Insong Koh, and <strong>Jong Park</strong><strong>.</strong> Genome Informatics, 2001, 12: 350-351.<br /> <br /> 17) <strong>Conservation of Protein Interaction Network in Evolution</strong>. <strong>Jong Park</strong> and Dan Bolser. Genome Informatics, 2001, 12:135-140.<br /> <br /> 16) <strong>Generating protein interaction maps from incomplete data: application to fold assignment</strong>. Lappe M., <strong>Park J</strong><strong>.</strong>, Niggemann O., and Holm L. Bioinformatics, 2001, Vol.17 Suppl.1, S149-S156. (ISMB 2001 paper printed in Bioinformatics) (ISSN:1367-4803)<br /> <br /> 15) <strong>Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast.<strong> Park J</strong></strong>, Lappe M. and Teichmann SA. Journal of Molecular Biology, 2001 Mar, 30;307(3):929-938. (ISSN : 0022-2836, Impact Factor : 5.542)<br /> <br /> 14) <strong>PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information</strong>. Qian J., Stenger B., Wilson CA., Lin J., Jansen R., Teichmann SA., <strong>Park J</strong><strong>.</strong>, Krebs WG., Yu H., Alexandrov V., Echols N., and Gerstein M. Nucleic Acids Res., 2001, 29(8):1750-1764. (ISSN:0305-1048)<br /> <br /> 13) <strong>A fully automatic evolutionary classification of protein folds: Dali domain dictionary version 3</strong>. Dietmann S., <strong>Park J</strong><strong>.</strong>, Notredame C., Heger A., Lappe M., and Holm L. Nucleic Acids Res., 2001 Jan, 29(1):55-57. (ISSN:0305-1048)<br /> <br /> 12) <strong>Estimating the significance of sequence order in protein secondary structure prediction</strong>. <strong>Jong Park</strong>, Sabine Dietmann, Andreas Heger, and Liisa Holm. Bioinformatics, 2000, 16(11):978-987. (for Issue 9) (ISSN:1307-4803)<br /> <br /> 11) <strong>Fast assignment of protein structures to sequences using the intermediate sequence library PDB-ISL</strong>. Sarah A. Teichmann, Cyrus Chothia, George M. Church, and <strong>Jong Park</strong>, Bioinformatics, 2000, 16(2), 117-124. (ISSN:1367-4803)<br /> <br /> 10) <strong>DaliLite workbench for protein structure comparison</strong>. Liisa Holm and <strong>Jong Park</strong>. Bioinformatics, 2000, Vol 16. Issue 6, p566-567. (ISSN:1367-4803)<br /> <br /> 9) <strong>RSDB: representative sequence databases with high information content</strong>. <strong>Jong Park</strong>, Liisa Holm, Andreas Heger, and Cyrus Chothia. Bioinformatics, 2000 May, Vol 16. Issue No. 5. 458-464. (ISSN:1367-4803)<br /> <br /> 8) <strong>Sequence Search Algorithm Assessment and Testing Toolkit (SAT)</strong>. <strong>Jong Park</strong>, Liisa Holm, and Cyrus Chothia. Bioinformatics, 2000, Vol 16. No.2, 104-110. (ISSN:1367-4803)<br /> <br /> 7) <strong>Sequence Comparisons Using Multiple Sequences Detect Three Times as Many Remote Homologues as Pairwise Methods</strong>. <strong>Park J</strong><strong>.</strong>, Karplus K., Barrett C., Hughey R., Haussler D., Hubbard T. and Chothia C., Journal of Molecular Biology, 11, Dec, 1998, 284(4):1201-1210. (ISSN:0022-2836)<br /> <br /> 6) <strong>Structural assignments to the proteins of Mycoplasma genitalium show that they have been formed by extensive gene duplications and domain rearrangements</strong>. Sarah Teichmann, <strong>Jong Park</strong><strong>,</strong> and Cyrus Chothia, PNAS, 8, Dec, 1998, 95(25):14658-14663.<br /> <br /> 5) <strong>DIVCLUS: an automatic method in the GEANFAMMER package that finds homologous domains in single- and multi-domain proteins</strong>. <strong>Jong Park</strong> and Sarah Teichmann. Bioinformatics, 1998, 14(2):144-50. (ISSN:1367-4803)<br /> <br /> 4) <strong>Intermediate sequences find distant sequence homologues</strong>. <strong>Jong Park</strong>, Sarah A. Teichmann, Tim Hubbard and Cyrus Chothia. Journal of Molecular Biology, 17, Oct, 1997, 273(1):349-354. (ISSN:0022-2836)<br /> <br /> 3) <strong>Protein structure prediction: Playing the fold</strong>. Hubbard T,<strong> Park J</strong><strong>.</strong>, Lahm A., Leplae R. and Tramontano A. TRENDS IN BIOCHEMICAL SCIENCES, 1996 Aug, 21(8):279-281. (ISSN:0968-0004)<br /> <br /> 2) <strong>Update on protein structure prediction: results of the IRBM 1995 workshop</strong>. Hubbard T., Tramontano A., Barton G., Jones D., Sippl M., Valencia A., Lesk A., Moult J., Rost B., Sander C., Schneider R., Lahm A., Leplae R., Buta C., Eisenstein M., Fjellstr^m O., Floeckner H., Grossman G., Hansen J., Helmer Citterich M., Joergensen F.S., Marchler-Bauer A., Osuna J., <strong>Park J</strong><strong>.</strong>, Reinhardt A., Ribas de Pouplana L., Rojo-Dominguez A., Saudek V., Sinclair J., Sturrock S., Venclovas C., Vinals C. 1996, Folding and Design, 1(3), 55-63. (ISSN-NO:1359-0278)<br /> <br /> 1) <strong>Fold recognition and ab initio structure predictions using Hidden Markov Models and [[beta]]-strand pair potentials</strong>. Tim Hubbard and <strong>Jong Park</strong>. <em>Proteins</em>, 1995 Nov, 23(3):398-402.</p>

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