View source for Bioperl

<p>&nbsp;<b style="color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px; line-height: 17.9200000762939px;">BioPerl</b><span style="color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px; line-height: 17.9200000762939px;">&nbsp;</span><span style="color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px; line-height: 17.9200000762939px;">is a collection of</span><span style="color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px; line-height: 17.9200000762939px;">&nbsp;</span><a href="http://en.wikipedia.org/wiki/Perl" title="Perl" style="font-family: sans-serif; font-size: 14px; line-height: 17.9200000762939px; text-decoration: none; color: rgb(11, 0, 128); background: none;">Perl</a><span style="color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px; line-height: 17.9200000762939px;">&nbsp;</span><span style="color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px; line-height: 17.9200000762939px;">modules that facilitate the development of Perl scripts for</span><span style="color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px; line-height: 17.9200000762939px;">&nbsp;</span><a href="http://en.wikipedia.org/wiki/Bioinformatics" title="Bioinformatics" style="font-family: sans-serif; font-size: 14px; line-height: 17.9200000762939px; text-decoration: none; color: rgb(11, 0, 128); background: none;">bioinformatics</a><span style="color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px; line-height: 17.9200000762939px;">&nbsp;</span><span style="color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px; line-height: 17.9200000762939px;">applications. It has played an integral role in the</span><span style="color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px; line-height: 17.9200000762939px;">&nbsp;</span><a href="http://en.wikipedia.org/wiki/Human_Genome_Project" title="Human Genome Project" style="font-family: sans-serif; font-size: 14px; line-height: 17.9200000762939px; text-decoration: none; color: rgb(11, 0, 128); background: none;">Human Genome Project</a><span style="color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px; line-height: 17.9200000762939px;">.</span></p>
<p style="margin: 0.5em 0px; line-height: 17.9200000762939px; color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px;">&nbsp;</p>
<p style="margin: 0.5em 0px; line-height: 17.9200000762939px; color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px;">[http://bioperl.net Bioperl.net]</p>
<p style="margin: 0.5em 0px; line-height: 17.9200000762939px; color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px;">&nbsp;</p>
<p style="margin: 0.5em 0px; line-height: 17.9200000762939px; color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px;"><b><span class="mw-headline" id="Background">Background</span></b></p>
<p style="margin: 0.5em 0px; line-height: 17.9200000762939px; color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px;">BioPerl is an active&nbsp;<a href="http://en.wikipedia.org/wiki/Open_source" title="Open source" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">open source</a>&nbsp;software project supported by the&nbsp;<a href="http://en.wikipedia.org/wiki/Open_Bioinformatics_Foundation" title="Open Bioinformatics Foundation" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">Open Bioinformatics Foundation</a>. The first set of Perl codes of Bioperl was created by&nbsp;<a href="http://en.wikipedia.org/wiki/Tim_Hubbard" title="Tim Hubbard" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">Tim Hubbard</a>&nbsp;and Jong Bhak<sup class="noprint Inline-Template Template-Fact" style="line-height: 1; font-size: 11.1999998092651px; white-space: nowrap;">[<i><a href="http://en.wikipedia.org/wiki/Wikipedia:Citation_needed" title="Wikipedia:Citation needed" style="text-decoration: none; color: rgb(11, 0, 128); background: none;"><span title="This claim needs references to reliable sources. (February 2014)">citation needed</span></a></i>]</sup>&nbsp;at&nbsp;<a href="http://en.wikipedia.org/wiki/Medical_Research_Council_(United_Kingdom)" title="Medical Research Council (United Kingdom)" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">MRC</a>&nbsp;Centre Cambridge where the first genome sequencing was carried out by Fred Sanger. MRC Centre was one of the hubs and birth places of modern bioinformatics as it had large amount of DNA sequences and 3D protein structures. The name Bioperl was coined jointly by Jong Bhak and&nbsp;<a href="http://en.wikipedia.org/wiki/Steven_E._Brenner" title="Steven E. Brenner" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">Steve Brenner</a>&nbsp;in a small room of&nbsp;<a href="http://en.wikipedia.org/wiki/Centre_for_Protein_Engineering" title="Centre for Protein Engineering" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">Centre for Protein Engineering</a>&nbsp;(CPE) of MRC Centre where&nbsp;<a href="http://en.wikipedia.org/wiki/Alan_Fersht" title="Alan Fersht" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">Alan Fersht</a>&nbsp;was the director. In that small room,&nbsp;<a href="http://en.wikipedia.org/wiki/Cyrus_Chothia" title="Cyrus Chothia" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">Cyrus Chothia</a>&nbsp;and Tim Hubbard were working with some of their Ph.D. students and colleagues. Tim Hubbard is an expert Perl programmer and he was using th_lib.pl that contained many useful Perl subroutines for bioinformatics. Jong Bhak, being the first Ph.D. student of Tim Hubbard created jong_lib.pl. Jong merged the two Perl subroutine libraries into Bio.pl. One day in 1995, Steve Brenner, a Ph.D. student of Cyrus Chothia visited the room and started to discuss what they would call the perl library after some lengthy (a few months) debate on whether Perl is superior to C for bioinformatics as Steve Brenner had his own C library for bioinformatics. The two Ph.D. students named the net Perl library for biology Bioperl after going through names such as protein perl, protperl, PerlBio, and so on. Steve Brenner organized a Bioperl session in 1995 at&nbsp;<a href="http://en.wikipedia.org/wiki/Intelligent_Systems_for_Molecular_Biology" title="Intelligent Systems for Molecular Biology" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">ISMB</a>&nbsp;Cambridge although it did not really happen. Bioperl had some users in coming months including Georg Fuellen who organized a training course in Germany. Georg's colleagues and students extended the Bioperl much and this was joined later by other people such as Steve Chervitz who was actively developing Perl codes for his yeast genome DB. The major expansion came when another Cambridge student&nbsp;<a href="http://en.wikipedia.org/wiki/Ewan_Birney" title="Ewan Birney" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">Ewan Birney</a>&nbsp;joined the wagon after another lengthy debate on if Perl was superior to C for bioinformatics and Ewan and many other people were very active in developing Bioperl.<sup class="noprint Inline-Template Template-Fact" style="line-height: 1; font-size: 11.1999998092651px; white-space: nowrap;">[<i><a href="http://en.wikipedia.org/wiki/Wikipedia:Citation_needed" title="Wikipedia:Citation needed" style="text-decoration: none; color: rgb(11, 0, 128); background: none;"><span title="This claim needs references to reliable sources. (December 2013)">citation needed</span></a></i>]</sup></p>
<p style="margin: 0.5em 0px; line-height: 17.9200000762939px; color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px;">The first stable release was on 11 June 2002; the most recent stable (in terms of API) release is 1.6.9 from 14 April 2011. There are also developer releases produced periodically. Version series 1.6.0 is considered to be the most stable (in terms of bugs) version of BioPerl and is recommended for everyday use, but the nightly builds are also extremely stable, and many BioPerl users stay current with those.</p>
<p style="margin: 0.5em 0px; line-height: 17.9200000762939px; color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px;">In order to take advantage of BioPerl, the user needs a basic understanding of the Perl programming language including an understanding of how to use Perl references, modules, objects and methods.</p>
<h2 style="font-weight: normal; margin: 1em 0px 0.25em; overflow: hidden; padding: 0px; border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(170, 170, 170); font-family: 'Linux Libertine', Georgia, Times, serif; line-height: 1.3; background-image: none; background-attachment: initial; background-size: initial; background-origin: initial; background-clip: initial; background-position: initial; background-repeat: initial;"><span class="mw-headline" id="Features">Features</span><span class="mw-editsection" style="-webkit-user-select: none; font-size: small; margin-left: 1em; vertical-align: baseline; line-height: 1em; display: inline-block; white-space: nowrap; unicode-bidi: -webkit-isolate; font-family: sans-serif;"><span class="mw-editsection-bracket" style="margin-right: 0px; color: rgb(85, 85, 85); margin-left: 0px;">[</span><a href="http://en.wikipedia.org/w/index.php?title=BioPerl&amp;action=edit&amp;section=2" title="Edit section: Features" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">edit</a><span class="mw-editsection-bracket" style="margin-left: 0px; color: rgb(85, 85, 85); margin-right: 0px;">]</span></span></h2>
<p style="margin: 0.5em 0px; line-height: 17.9200000762939px; color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px;">BioPerl provides software modules for many of the typical tasks of bioinformatics programming. These include:</p>
<ul style="line-height: 1.5em; margin: 0.3em 0px 0px 1.6em; padding: 0px; list-style-image: url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%0A%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20version%3D%221.1%22%20width%3D%225%22%20height%3D%2213%22%3E%0A%3Ccircle%20cx%3D%222.5%22%20cy%3D%229.5%22%20r%3D%222.5%22%20fill%3D%22%2300528c%22%2F%3E%0A%3C%2Fsvg%3E%0A); color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px;">
    <li style="margin-bottom: 0.1em;">Accessing&nbsp;<a href="http://en.wikipedia.org/wiki/Nucleotide_sequence" title="Nucleotide sequence" class="mw-redirect" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">nucleotide</a>&nbsp;and&nbsp;<a href="http://en.wikipedia.org/wiki/Peptide_sequence" title="Peptide sequence" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">peptide</a>&nbsp;sequence data from local and remote&nbsp;<a href="http://en.wikipedia.org/wiki/Biological_database" title="Biological database" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">databases</a></li>
    <li style="margin-bottom: 0.1em;">Transforming&nbsp;<a href="http://en.wikipedia.org/wiki/List_of_file_formats#Biology" title="List of file formats" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">formats</a>&nbsp;of database/ file records</li>
    <li style="margin-bottom: 0.1em;">Manipulating individual sequences</li>
    <li style="margin-bottom: 0.1em;">Searching for similar sequences</li>
    <li style="margin-bottom: 0.1em;">Creating and manipulating&nbsp;<a href="http://en.wikipedia.org/wiki/Sequence_alignment" title="Sequence alignment" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">sequence alignments</a></li>
    <li style="margin-bottom: 0.1em;">Searching for&nbsp;<a href="http://en.wikipedia.org/wiki/Gene" title="Gene" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">genes</a>&nbsp;and other structures on&nbsp;<a href="http://en.wikipedia.org/wiki/Genome" title="Genome" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">genomic</a>&nbsp;DNA</li>
    <li style="margin-bottom: 0.1em;">Developing machine readable sequence&nbsp;<a href="http://en.wikipedia.org/wiki/Genome_project#Genome_annotation" title="Genome project" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">annotations</a></li>
</ul>
<h2 style="font-weight: normal; margin: 1em 0px 0.25em; overflow: hidden; padding: 0px; border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(170, 170, 170); font-family: 'Linux Libertine', Georgia, Times, serif; line-height: 1.3; background-image: none; background-attachment: initial; background-size: initial; background-origin: initial; background-clip: initial; background-position: initial; background-repeat: initial;"><span class="mw-headline" id="Usage">Usage</span><span class="mw-editsection" style="-webkit-user-select: none; font-size: small; margin-left: 1em; vertical-align: baseline; line-height: 1em; display: inline-block; white-space: nowrap; unicode-bidi: -webkit-isolate; font-family: sans-serif;"><span class="mw-editsection-bracket" style="margin-right: 0px; color: rgb(85, 85, 85); margin-left: 0px;">[</span><a href="http://en.wikipedia.org/w/index.php?title=BioPerl&amp;action=edit&amp;section=3" title="Edit section: Usage" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">edit</a><span class="mw-editsection-bracket" style="margin-left: 0px; color: rgb(85, 85, 85); margin-right: 0px;">]</span></span></h2>
<p style="margin: 0.5em 0px; line-height: 17.9200000762939px; color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px;">In addition to being used directly by end-users,<sup id="cite_ref-4" class="reference" style="line-height: 1; unicode-bidi: -webkit-isolate; font-size: 11.1999998092651px;"><a href="http://en.wikipedia.org/wiki/BioPerl#cite_note-4" style="text-decoration: none; color: rgb(11, 0, 128); white-space: nowrap; background: none;">[4]</a></sup>&nbsp;BioPerl has also provided the base for a wide variety of bioinformatic tools, including&nbsp;<a rel="nofollow" class="external text" href="http://www.bioperl.org/wiki/BioPerl_publications" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">amongst others</a>:</p>
<ul style="line-height: 1.5em; margin: 0.3em 0px 0px 1.6em; padding: 0px; list-style-image: url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%0A%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20version%3D%221.1%22%20width%3D%225%22%20height%3D%2213%22%3E%0A%3Ccircle%20cx%3D%222.5%22%20cy%3D%229.5%22%20r%3D%222.5%22%20fill%3D%22%2300528c%22%2F%3E%0A%3C%2Fsvg%3E%0A); color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px;">
    <li style="margin-bottom: 0.1em;">SynBrowse&nbsp;<sup id="cite_ref-5" class="reference" style="line-height: 1; unicode-bidi: -webkit-isolate; font-size: 11.1999998092651px;"><a href="http://en.wikipedia.org/wiki/BioPerl#cite_note-5" style="text-decoration: none; color: rgb(11, 0, 128); white-space: nowrap; background: none;">[5]</a></sup></li>
    <li style="margin-bottom: 0.1em;">GeneComber&nbsp;<sup id="cite_ref-6" class="reference" style="line-height: 1; unicode-bidi: -webkit-isolate; font-size: 11.1999998092651px;"><a href="http://en.wikipedia.org/wiki/BioPerl#cite_note-6" style="text-decoration: none; color: rgb(11, 0, 128); white-space: nowrap; background: none;">[6]</a></sup></li>
    <li style="margin-bottom: 0.1em;">TFBS&nbsp;<sup id="cite_ref-7" class="reference" style="line-height: 1; unicode-bidi: -webkit-isolate; font-size: 11.1999998092651px;"><a href="http://en.wikipedia.org/wiki/BioPerl#cite_note-7" style="text-decoration: none; color: rgb(11, 0, 128); white-space: nowrap; background: none;">[7]</a></sup></li>
    <li style="margin-bottom: 0.1em;">MIMOX&nbsp;<sup id="cite_ref-8" class="reference" style="line-height: 1; unicode-bidi: -webkit-isolate; font-size: 11.1999998092651px;"><a href="http://en.wikipedia.org/wiki/BioPerl#cite_note-8" style="text-decoration: none; color: rgb(11, 0, 128); white-space: nowrap; background: none;">[8]</a></sup></li>
    <li style="margin-bottom: 0.1em;">BioParser&nbsp;<sup id="cite_ref-9" class="reference" style="line-height: 1; unicode-bidi: -webkit-isolate; font-size: 11.1999998092651px;"><a href="http://en.wikipedia.org/wiki/BioPerl#cite_note-9" style="text-decoration: none; color: rgb(11, 0, 128); white-space: nowrap; background: none;">[9]</a></sup></li>
    <li style="margin-bottom: 0.1em;">Degenerate primer design&nbsp;<sup id="cite_ref-10" class="reference" style="line-height: 1; unicode-bidi: -webkit-isolate; font-size: 11.1999998092651px;"><a href="http://en.wikipedia.org/wiki/BioPerl#cite_note-10" style="text-decoration: none; color: rgb(11, 0, 128); white-space: nowrap; background: none;">[10]</a></sup></li>
    <li style="margin-bottom: 0.1em;">Querying the public databases&nbsp;<sup id="cite_ref-11" class="reference" style="line-height: 1; unicode-bidi: -webkit-isolate; font-size: 11.1999998092651px;"><a href="http://en.wikipedia.org/wiki/BioPerl#cite_note-11" style="text-decoration: none; color: rgb(11, 0, 128); white-space: nowrap; background: none;">[11]</a></sup></li>
    <li style="margin-bottom: 0.1em;">Current Comparative Table&nbsp;<sup id="cite_ref-12" class="reference" style="line-height: 1; unicode-bidi: -webkit-isolate; font-size: 11.1999998092651px;"><a href="http://en.wikipedia.org/wiki/BioPerl#cite_note-12" style="text-decoration: none; color: rgb(11, 0, 128); white-space: nowrap; background: none;">[12]</a></sup></li>
</ul>
<p style="margin: 0.5em 0px; line-height: 17.9200000762939px; color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px;">New tools and algorithms from external developers are often integrated directly into BioPerl itself:</p>
<ul style="line-height: 1.5em; margin: 0.3em 0px 0px 1.6em; padding: 0px; list-style-image: url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%0A%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20version%3D%221.1%22%20width%3D%225%22%20height%3D%2213%22%3E%0A%3Ccircle%20cx%3D%222.5%22%20cy%3D%229.5%22%20r%3D%222.5%22%20fill%3D%22%2300528c%22%2F%3E%0A%3C%2Fsvg%3E%0A); color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px;">
    <li style="margin-bottom: 0.1em;">Dealing with phylogenetic trees and nested taxa&nbsp;<sup id="cite_ref-13" class="reference" style="line-height: 1; unicode-bidi: -webkit-isolate; font-size: 11.1999998092651px;"><a href="http://en.wikipedia.org/wiki/BioPerl#cite_note-13" style="text-decoration: none; color: rgb(11, 0, 128); white-space: nowrap; background: none;">[13]</a></sup></li>
    <li style="margin-bottom: 0.1em;">FPC Web tools&nbsp;<sup id="cite_ref-14" class="reference" style="line-height: 1; unicode-bidi: -webkit-isolate; font-size: 11.1999998092651px;"><a href="http://en.wikipedia.org/wiki/BioPerl#cite_note-14" style="text-decoration: none; color: rgb(11, 0, 128); white-space: nowrap; background: none;">[14]</a></sup></li>
</ul>
<h2 style="font-weight: normal; margin: 1em 0px 0.25em; overflow: hidden; padding: 0px; border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(170, 170, 170); font-family: 'Linux Libertine', Georgia, Times, serif; line-height: 1.3; background-image: none; background-attachment: initial; background-size: initial; background-origin: initial; background-clip: initial; background-position: initial; background-repeat: initial;"><span class="mw-headline" id="Related_Libraries_in_Other_Programming_Languages">Related Libraries in Other Programming Languages</span><span class="mw-editsection" style="-webkit-user-select: none; font-size: small; margin-left: 1em; vertical-align: baseline; line-height: 1em; display: inline-block; white-space: nowrap; unicode-bidi: -webkit-isolate; font-family: sans-serif;"><span class="mw-editsection-bracket" style="margin-right: 0px; color: rgb(85, 85, 85); margin-left: 0px;">[</span><a href="http://en.wikipedia.org/w/index.php?title=BioPerl&amp;action=edit&amp;section=4" title="Edit section: Related Libraries in Other Programming Languages" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">edit</a><span class="mw-editsection-bracket" style="margin-left: 0px; color: rgb(85, 85, 85); margin-right: 0px;">]</span></span></h2>
<p style="margin: 0.5em 0px; line-height: 17.9200000762939px; color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px;">Several related bioinformatics libraries implemented in other programming languages exist as part of the&nbsp;<a href="http://en.wikipedia.org/wiki/Open_Bioinformatics_Foundation" title="Open Bioinformatics Foundation" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">Open Bioinformatics Foundation</a>&nbsp;including:</p>
<ul style="line-height: 1.5em; margin: 0.3em 0px 0px 1.6em; padding: 0px; list-style-image: url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%0A%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20version%3D%221.1%22%20width%3D%225%22%20height%3D%2213%22%3E%0A%3Ccircle%20cx%3D%222.5%22%20cy%3D%229.5%22%20r%3D%222.5%22%20fill%3D%22%2300528c%22%2F%3E%0A%3C%2Fsvg%3E%0A); color: rgb(37, 37, 37); font-family: sans-serif; font-size: 14px;">
    <li style="margin-bottom: 0.1em;"><a href="http://en.wikipedia.org/wiki/Biopython" title="Biopython" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">Biopython</a></li>
    <li style="margin-bottom: 0.1em;"><a href="http://en.wikipedia.org/wiki/BioJava" title="BioJava" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">BioJava</a></li>
    <li style="margin-bottom: 0.1em;"><a href="http://en.wikipedia.org/wiki/BioRuby" title="BioRuby" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">BioRuby</a></li>
    <li style="margin-bottom: 0.1em;"><a href="http://en.wikipedia.org/wiki/BioPHP" title="BioPHP" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">BioPHP</a></li>
    <li style="margin-bottom: 0.1em;"><a href="http://en.wikipedia.org/wiki/BioJS" title="BioJS" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">BioJS</a></li>
    <li style="margin-bottom: 0.1em;"><a href="http://en.wikipedia.org/wiki/Bioconductor" title="Bioconductor" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">Bioconductor</a></li>
</ul>
<h2 style="font-weight: normal; margin: 1em 0px 0.25em; overflow: hidden; padding: 0px; border-bottom-width: 1px; border-bottom-style: solid; border-bottom-color: rgb(170, 170, 170); font-family: 'Linux Libertine', Georgia, Times, serif; line-height: 1.3; background-image: none; background-attachment: initial; background-size: initial; background-origin: initial; background-clip: initial; background-position: initial; background-repeat: initial;"><span class="mw-headline" id="References">References</span><span class="mw-editsection" style="-webkit-user-select: none; font-size: small; margin-left: 1em; vertical-align: baseline; line-height: 1em; display: inline-block; white-space: nowrap; unicode-bidi: -webkit-isolate; font-family: sans-serif;"><span class="mw-editsection-bracket" style="margin-right: 0px; color: rgb(85, 85, 85); margin-left: 0px;">[</span><a href="http://en.wikipedia.org/w/index.php?title=BioPerl&amp;action=edit&amp;section=5" title="Edit section: References" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">edit</a><span class="mw-editsection-bracket" style="margin-left: 0px; color: rgb(85, 85, 85); margin-right: 0px;">]</span></span></h2>
<div class="reflist columns references-column-count references-column-count-2" style="font-size: 12.6000003814697px; margin-bottom: 0.5em; margin-top: 0.3em; color: rgb(37, 37, 37); font-family: sans-serif; -webkit-column-count: 2; list-style-type: decimal;">
<ol class="references" style="line-height: 1.5em; margin: 0px 0px 0.5em 3.2em; padding: 0px; list-style-image: none; font-size: 12.6000003814697px; list-style-type: inherit;">
    <li id="cite_note-1" style="margin-bottom: 0.1em; -webkit-column-break-inside: avoid; page-break-inside: avoid;"><span class="mw-cite-backlink" style="-webkit-user-select: none;"><b><a href="http://en.wikipedia.org/wiki/BioPerl#cite_ref-1" style="text-decoration: none; color: rgb(11, 0, 128); background: none;"><span class="cite-accessibility-label" style="top: -99999px; clip: rect(1px 1px 1px 1px); overflow: hidden; position: absolute !important; padding: 0px !important; border: 0px !important; height: 1px !important; width: 1px !important; -webkit-user-select: none;">Jump up</span>^</a></b></span>&nbsp;<span class="reference-text"><span class="citation journal" style="word-wrap: break-word;">Stajich, J. E.; Block, D.; Boulez, K.;&nbsp;<a href="http://en.wikipedia.org/wiki/Steven_E._Brenner" title="Steven E. Brenner" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">Brenner, S.</a>; Chervitz, S.; Dagdigian, C.; Fuellen, G.; Gilbert, J.; Korf, I.; Lapp, H.; Lehv&auml;slaiho, H.; Matsalla, C.; Mungall, C. J.; Osborne, B. I.; Pocock, M. R.; Schattner, P.; Senger, M.;&nbsp;<a href="http://en.wikipedia.org/wiki/Lincoln_Stein" title="Lincoln Stein" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">Stein, L. D.</a>; Stupka, E.; Wilkinson, M. D.;&nbsp;<a href="http://en.wikipedia.org/wiki/Ewan_Birney" title="Ewan Birney" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">Birney, E.</a>&nbsp;(2002).&nbsp;<a rel="nofollow" class="external text" href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC187536" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">&quot;The BioPerl Toolkit: Perl Modules for the Life Sciences&quot;</a>.&nbsp;<i>Genome Research</i><b>12</b>&nbsp;(10): 1611&ndash;1618.&nbsp;<a href="http://en.wikipedia.org/wiki/Digital_object_identifier" title="Digital object identifier" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">doi</a>:<a rel="nofollow" class="external text" href="http://dx.doi.org/10.1101%2Fgr.361602" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">10.1101/gr.361602</a>.&nbsp;<a href="http://en.wikipedia.org/wiki/PubMed_Central" title="PubMed Central" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">PMC</a>&nbsp;<a rel="nofollow" class="external text" href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC187536" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">187536</a>.&nbsp;<a href="http://en.wikipedia.org/wiki/PubMed_Identifier" title="PubMed Identifier" class="mw-redirect" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">PMID</a>&nbsp;<a rel="nofollow" class="external text" href="http://www.ncbi.nlm.nih.gov/pubmed/12368254" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">12368254</a>.</span>&nbsp;<span class="plainlinks noprint" style="font-size: smaller;"><a class="external text" href="http://en.wikipedia.org/w/index.php?title=Template:Cite_doi/10.1101.2Fgr.361602&amp;action=edit&amp;editintro=Template:Cite_doi/editintro2" style="text-decoration: none; color: rgb(102, 51, 102); padding: 0px !important; background: none !important;">edit</a></span></span></li>
    <li id="cite_note-2" style="margin-bottom: 0.1em; -webkit-column-break-inside: avoid; page-break-inside: avoid;"><span class="mw-cite-backlink" style="-webkit-user-select: none;"><b><a href="http://en.wikipedia.org/wiki/BioPerl#cite_ref-2" style="text-decoration: none; color: rgb(11, 0, 128); background: none;"><span class="cite-accessibility-label" style="top: -99999px; clip: rect(1px 1px 1px 1px); overflow: hidden; position: absolute !important; padding: 0px !important; border: 0px !important; height: 1px !important; width: 1px !important; -webkit-user-select: none;">Jump up</span>^</a></b></span>&nbsp;<span class="reference-text"><a rel="nofollow" class="external free" href="http://www.bioperl.org/wiki/BioPerl_publications" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">http://www.bioperl.org/wiki/BioPerl_publications</a>&nbsp;A complete, up-to-date list of BioPerl references</span></li>
    <li id="cite_note-3" style="margin-bottom: 0.1em; -webkit-column-break-inside: avoid; page-break-inside: avoid;"><span class="mw-cite-backlink" style="-webkit-user-select: none;"><b><a href="http://en.wikipedia.org/wiki/BioPerl#cite_ref-3" style="text-decoration: none; color: rgb(11, 0, 128); background: none;"><span class="cite-accessibility-label" style="top: -99999px; clip: rect(1px 1px 1px 1px); overflow: hidden; position: absolute !important; padding: 0px !important; border: 0px !important; height: 1px !important; width: 1px !important; -webkit-user-select: none;">Jump up</span>^</a></b></span>&nbsp;<span class="reference-text"><span class="citation journal" style="word-wrap: break-word;"><a href="http://en.wikipedia.org/wiki/Lincoln_Stein" title="Lincoln Stein" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">Lincoln Stein</a>&nbsp;(1996).&nbsp;<a rel="nofollow" class="external text" href="http://www.bioperl.org/wiki/How_Perl_saved_human_genome" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">&quot;How Perl saved the human genome project&quot;</a>.&nbsp;<i>The Perl Journal</i><b>1</b>&nbsp;(2)<span class="reference-accessdate">. Retrieved 2009-02-25 (Bioperl.org)</span>.</span>&nbsp;<span class="error citation-comment" style="font-size: 12.6000003814697px; color: rgb(204, 0, 0);">Check date values in:&nbsp;<code style="font-family: monospace, Courier; color: inherit; border: inherit; border-radius: 2px; padding: inherit; background-color: rgb(249, 249, 249);">|accessdate=</code>&nbsp;(<a href="http://en.wikipedia.org/wiki/Help:CS1_errors#bad_date" title="Help:CS1 errors" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">help</a>)</span></span></li>
    <li id="cite_note-4" style="margin-bottom: 0.1em; -webkit-column-break-inside: avoid; page-break-inside: avoid;"><span class="mw-cite-backlink" style="-webkit-user-select: none;"><b><a href="http://en.wikipedia.org/wiki/BioPerl#cite_ref-4" style="text-decoration: none; color: rgb(11, 0, 128); background: none;"><span class="cite-accessibility-label" style="top: -99999px; clip: rect(1px 1px 1px 1px); overflow: hidden; position: absolute !important; padding: 0px !important; border: 0px !important; height: 1px !important; width: 1px !important; -webkit-user-select: none;">Jump up</span>^</a></b></span>&nbsp;<span class="reference-text"><span class="citation journal" style="word-wrap: break-word;">Khaja R, MacDonald J, Zhang J, Scherer S (2006). &quot;Methods for identifying and mapping recent segmental and gene duplications in eukaryotic genomes&quot;.&nbsp;<i>Methods Mol Biol</i>&nbsp;<b>338</b>: 9&ndash;20.&nbsp;<a href="http://en.wikipedia.org/wiki/Digital_object_identifier" title="Digital object identifier" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">doi</a>:<a rel="nofollow" class="external text" href="http://dx.doi.org/10.1385%2F1-59745-097-9%3A9" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">10.1385/1-59745-097-9:9</a>.&nbsp;<a href="http://en.wikipedia.org/wiki/International_Standard_Book_Number" title="International Standard Book Number" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">ISBN</a>&nbsp;<a href="http://en.wikipedia.org/wiki/Special:BookSources/1-59745-097-9" title="Special:BookSources/1-59745-097-9" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">1-59745-097-9</a>.&nbsp;<a href="http://en.wikipedia.org/wiki/PubMed_Identifier" title="PubMed Identifier" class="mw-redirect" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">PMID</a>&nbsp;<a rel="nofollow" class="external text" href="http://www.ncbi.nlm.nih.gov/pubmed/16888347" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">16888347</a>.</span></span></li>
    <li id="cite_note-5" style="margin-bottom: 0.1em; -webkit-column-break-inside: avoid; page-break-inside: avoid;"><span class="mw-cite-backlink" style="-webkit-user-select: none;"><b><a href="http://en.wikipedia.org/wiki/BioPerl#cite_ref-5" style="text-decoration: none; color: rgb(11, 0, 128); background: none;"><span class="cite-accessibility-label" style="top: -99999px; clip: rect(1px 1px 1px 1px); overflow: hidden; position: absolute !important; padding: 0px !important; border: 0px !important; height: 1px !important; width: 1px !important; -webkit-user-select: none;">Jump up</span>^</a></b></span>&nbsp;<span class="reference-text"><span class="citation journal" style="word-wrap: break-word;">Pan, X.;&nbsp;<a href="http://en.wikipedia.org/wiki/Lincoln_Stein" title="Lincoln Stein" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">Stein, L.</a>; Brendel, V. (2005). &quot;SynBrowse: A synteny browser for comparative sequence analysis&quot;.&nbsp;<i>Bioinformatics</i>&nbsp;<b>21</b>&nbsp;(17): 3461&ndash;3468.<a href="http://en.wikipedia.org/wiki/Digital_object_identifier" title="Digital object identifier" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">doi</a>:<a rel="nofollow" class="external text" href="http://dx.doi.org/10.1093%2Fbioinformatics%2Fbti555" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">10.1093/bioinformatics/bti555</a>.&nbsp;<a href="http://en.wikipedia.org/wiki/PubMed_Identifier" title="PubMed Identifier" class="mw-redirect" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">PMID</a>&nbsp;<a rel="nofollow" class="external text" href="http://www.ncbi.nlm.nih.gov/pubmed/15994196" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">15994196</a>.</span>&nbsp;<span class="plainlinks noprint" style="font-size: smaller;"><a class="external text" href="http://en.wikipedia.org/w/index.php?title=Template:Cite_doi/10.1093.2Fbioinformatics.2Fbti555&amp;action=edit&amp;editintro=Template:Cite_doi/editintro2" style="text-decoration: none; color: rgb(102, 51, 102); padding: 0px !important; background: none !important;">edit</a></span></span></li>
    <li id="cite_note-6" style="margin-bottom: 0.1em; -webkit-column-break-inside: avoid; page-break-inside: avoid;"><span class="mw-cite-backlink" style="-webkit-user-select: none;"><b><a href="http://en.wikipedia.org/wiki/BioPerl#cite_ref-6" style="text-decoration: none; color: rgb(11, 0, 128); background: none;"><span class="cite-accessibility-label" style="top: -99999px; clip: rect(1px 1px 1px 1px); overflow: hidden; position: absolute !important; padding: 0px !important; border: 0px !important; height: 1px !important; width: 1px !important; -webkit-user-select: none;">Jump up</span>^</a></b></span>&nbsp;<span class="reference-text"><span class="citation journal" style="word-wrap: break-word;">Shah, S. P.; McVicker, G. P.; MacKworth, A. K.; Rogic, S.; Ouellette, B. F. F. (2003). &quot;GeneComber: Combining outputs of gene prediction programs for improved results&quot;.<i>Bioinformatics</i>&nbsp;<b>19</b>&nbsp;(10): 1296&ndash;1297.&nbsp;<a href="http://en.wikipedia.org/wiki/Digital_object_identifier" title="Digital object identifier" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">doi</a>:<a rel="nofollow" class="external text" href="http://dx.doi.org/10.1093%2Fbioinformatics%2Fbtg139" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">10.1093/bioinformatics/btg139</a>.<a href="http://en.wikipedia.org/wiki/PubMed_Identifier" title="PubMed Identifier" class="mw-redirect" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">PMID</a>&nbsp;<a rel="nofollow" class="external text" href="http://www.ncbi.nlm.nih.gov/pubmed/12835277" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">12835277</a>.</span>&nbsp;<span class="plainlinks noprint" style="font-size: smaller;"><a class="external text" href="http://en.wikipedia.org/w/index.php?title=Template:Cite_doi/10.1093.2Fbioinformatics.2Fbtg139&amp;action=edit&amp;editintro=Template:Cite_doi/editintro2" style="text-decoration: none; color: rgb(102, 51, 102); padding: 0px !important; background: none !important;">edit</a></span></span></li>
    <li id="cite_note-7" style="margin-bottom: 0.1em; -webkit-column-break-inside: avoid; page-break-inside: avoid;"><span class="mw-cite-backlink" style="-webkit-user-select: none;"><b><a href="http://en.wikipedia.org/wiki/BioPerl#cite_ref-7" style="text-decoration: none; color: rgb(11, 0, 128); background: none;"><span class="cite-accessibility-label" style="top: -99999px; clip: rect(1px 1px 1px 1px); overflow: hidden; position: absolute !important; padding: 0px !important; border: 0px !important; height: 1px !important; width: 1px !important; -webkit-user-select: none;">Jump up</span>^</a></b></span>&nbsp;<span class="reference-text"><span class="citation journal" style="word-wrap: break-word;">Lenhard, B.; Wasserman, W. W. (2002). &quot;TFBS: Computational framework for transcription factor binding site analysis&quot;.&nbsp;<i>Bioinformatics</i>&nbsp;<b>18</b>&nbsp;(8): 1135&ndash;1136.<a href="http://en.wikipedia.org/wiki/Digital_object_identifier" title="Digital object identifier" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">doi</a>:<a rel="nofollow" class="external text" href="http://dx.doi.org/10.1093%2Fbioinformatics%2F18.8.1135" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">10.1093/bioinformatics/18.8.1135</a>.&nbsp;<a href="http://en.wikipedia.org/wiki/PubMed_Identifier" title="PubMed Identifier" class="mw-redirect" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">PMID</a>&nbsp;<a rel="nofollow" class="external text" href="http://www.ncbi.nlm.nih.gov/pubmed/12176838" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">12176838</a>.</span>&nbsp;<span class="plainlinks noprint" style="font-size: smaller;"><a class="external text" href="http://en.wikipedia.org/w/index.php?title=Template:Cite_doi/10.1093.2Fbioinformatics.2F18.8.1135&amp;action=edit&amp;editintro=Template:Cite_doi/editintro2" style="text-decoration: none; color: rgb(102, 51, 102); padding: 0px !important; background: none !important;">edit</a></span></span></li>
    <li id="cite_note-8" style="margin-bottom: 0.1em; -webkit-column-break-inside: avoid; page-break-inside: avoid;"><span class="mw-cite-backlink" style="-webkit-user-select: none;"><b><a href="http://en.wikipedia.org/wiki/BioPerl#cite_ref-8" style="text-decoration: none; color: rgb(11, 0, 128); background: none;"><span class="cite-accessibility-label" style="top: -99999px; clip: rect(1px 1px 1px 1px); overflow: hidden; position: absolute !important; padding: 0px !important; border: 0px !important; height: 1px !important; width: 1px !important; -webkit-user-select: none;">Jump up</span>^</a></b></span>&nbsp;<span class="reference-text"><span class="citation journal" style="word-wrap: break-word;">Huang, J.; Gutteridge, A.; Honda, W.; Kanehisa, M. (2006).&nbsp;<a rel="nofollow" class="external text" href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1618411" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">&quot;MIMOX: A web tool for phage display based epitope mapping&quot;</a>.&nbsp;<i>BMC Bioinformatics</i>&nbsp;<b>7</b>: 451.&nbsp;<a href="http://en.wikipedia.org/wiki/Digital_object_identifier" title="Digital object identifier" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">doi</a>:<a rel="nofollow" class="external text" href="http://dx.doi.org/10.1186%2F1471-2105-7-451" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">10.1186/1471-2105-7-451</a>.&nbsp;<a href="http://en.wikipedia.org/wiki/PubMed_Central" title="PubMed Central" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">PMC</a>&nbsp;<a rel="nofollow" class="external text" href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1618411" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">1618411</a>.&nbsp;<a href="http://en.wikipedia.org/wiki/PubMed_Identifier" title="PubMed Identifier" class="mw-redirect" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">PMID</a>&nbsp;<a rel="nofollow" class="external text" href="http://www.ncbi.nlm.nih.gov/pubmed/17038191" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">17038191</a>.</span>&nbsp;<span class="plainlinks noprint" style="font-size: smaller;"><a class="external text" href="http://en.wikipedia.org/w/index.php?title=Template:Cite_doi/10.1186.2F1471-2105-7-451&amp;action=edit&amp;editintro=Template:Cite_doi/editintro2" style="text-decoration: none; color: rgb(102, 51, 102); padding: 0px !important; background: none !important;">edit</a></span></span></li>
    <li id="cite_note-9" style="margin-bottom: 0.1em; -webkit-column-break-inside: avoid; page-break-inside: avoid;"><span class="mw-cite-backlink" style="-webkit-user-select: none;"><b><a href="http://en.wikipedia.org/wiki/BioPerl#cite_ref-9" style="text-decoration: none; color: rgb(11, 0, 128); background: none;"><span class="cite-accessibility-label" style="top: -99999px; clip: rect(1px 1px 1px 1px); overflow: hidden; position: absolute !important; padding: 0px !important; border: 0px !important; height: 1px !important; width: 1px !important; -webkit-user-select: none;">Jump up</span>^</a></b></span>&nbsp;<span class="reference-text"><span class="citation journal" style="word-wrap: break-word;">Catanho, M.; Mascarenhas, D.; Degrave, W.; De Miranda, A. B.&nbsp;?L. (2006). &quot;BioParser&quot;.<i>Applied Bioinformatics</i>&nbsp;<b>5</b>&nbsp;(1): 49&ndash;53.&nbsp;<a href="http://en.wikipedia.org/wiki/Digital_object_identifier" title="Digital object identifier" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">doi</a>:<a rel="nofollow" class="external text" href="http://dx.doi.org/10.2165%2F00822942-200605010-00007" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">10.2165/00822942-200605010-00007</a>.<a href="http://en.wikipedia.org/wiki/PubMed_Identifier" title="PubMed Identifier" class="mw-redirect" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">PMID</a>&nbsp;<a rel="nofollow" class="external text" href="http://www.ncbi.nlm.nih.gov/pubmed/16539538" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">16539538</a>.</span>&nbsp;<span class="plainlinks noprint" style="font-size: smaller;"><a class="external text" href="http://en.wikipedia.org/w/index.php?title=Template:Cite_doi/10.2165.2F00822942-200605010-00007&amp;action=edit&amp;editintro=Template:Cite_doi/editintro2" style="text-decoration: none; color: rgb(102, 51, 102); padding: 0px !important; background: none !important;">edit</a></span></span></li>
    <li id="cite_note-10" style="margin-bottom: 0.1em; -webkit-column-break-inside: avoid; page-break-inside: avoid;"><span class="mw-cite-backlink" style="-webkit-user-select: none;"><b><a href="http://en.wikipedia.org/wiki/BioPerl#cite_ref-10" style="text-decoration: none; color: rgb(11, 0, 128); background: none;"><span class="cite-accessibility-label" style="top: -99999px; clip: rect(1px 1px 1px 1px); overflow: hidden; position: absolute !important; padding: 0px !important; border: 0px !important; height: 1px !important; width: 1px !important; -webkit-user-select: none;">Jump up</span>^</a></b></span>&nbsp;<span class="reference-text"><span class="citation journal" style="word-wrap: break-word;">Wei, X.; Kuhn, D. N.; Narasimhan, G. (2003). &quot;Degenerate primer design via clustering&quot;.<i>Proceedings / IEEE Computer Society Bioinformatics Conference. IEEE Computer Society Bioinformatics Conference</i>&nbsp;<b>2</b>: 75&ndash;83.&nbsp;<a href="http://en.wikipedia.org/wiki/PubMed_Identifier" title="PubMed Identifier" class="mw-redirect" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">PMID</a>&nbsp;<a rel="nofollow" class="external text" href="http://www.ncbi.nlm.nih.gov/pubmed/16452781" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">16452781</a>.</span><span class="plainlinks noprint" style="font-size: smaller;">&nbsp;<a class="external text" href="http://en.wikipedia.org/w/index.php?title=Template:Cite_pmid/16452781&amp;action=edit&amp;editintro=Template:Cite_pmid/editintro2" style="text-decoration: none; color: rgb(102, 51, 102); padding: 0px !important; background: none !important;">edit</a></span></span></li>
    <li id="cite_note-11" style="margin-bottom: 0.1em; -webkit-column-break-inside: avoid; page-break-inside: avoid;"><span class="mw-cite-backlink" style="-webkit-user-select: none;"><b><a href="http://en.wikipedia.org/wiki/BioPerl#cite_ref-11" style="text-decoration: none; color: rgb(11, 0, 128); background: none;"><span class="cite-accessibility-label" style="top: -99999px; clip: rect(1px 1px 1px 1px); overflow: hidden; position: absolute !important; padding: 0px !important; border: 0px !important; height: 1px !important; width: 1px !important; -webkit-user-select: none;">Jump up</span>^</a></b></span>&nbsp;<span class="reference-text"><span class="citation journal" style="word-wrap: break-word;">Croce, O.; Lamarre, M. L.; Christen, R. (2006).&nbsp;<a rel="nofollow" class="external text" href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1403806" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">&quot;Querying the public databases for sequences using complex keywords contained in the feature lines&quot;</a>.&nbsp;<i>BMC Bioinformatics</i>&nbsp;<b>7</b>: 45.&nbsp;<a href="http://en.wikipedia.org/wiki/Digital_object_identifier" title="Digital object identifier" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">doi</a>:<a rel="nofollow" class="external text" href="http://dx.doi.org/10.1186%2F1471-2105-7-45" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">10.1186/1471-2105-7-45</a>.&nbsp;<a href="http://en.wikipedia.org/wiki/PubMed_Central" title="PubMed Central" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">PMC</a>&nbsp;<a rel="nofollow" class="external text" href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1403806" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">1403806</a>.&nbsp;<a href="http://en.wikipedia.org/wiki/PubMed_Identifier" title="PubMed Identifier" class="mw-redirect" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">PMID</a>&nbsp;<a rel="nofollow" class="external text" href="http://www.ncbi.nlm.nih.gov/pubmed/16441875" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">16441875</a>.</span><span class="plainlinks noprint" style="font-size: smaller;"><a class="external text" href="http://en.wikipedia.org/w/index.php?title=Template:Cite_doi/10.1186.2F1471-2105-7-45&amp;action=edit&amp;editintro=Template:Cite_doi/editintro2" style="text-decoration: none; color: rgb(102, 51, 102); padding: 0px !important; background: none !important;">edit</a></span></span></li>
    <li id="cite_note-12" style="margin-bottom: 0.1em; -webkit-column-break-inside: avoid; page-break-inside: avoid;"><span class="mw-cite-backlink" style="-webkit-user-select: none;"><b><a href="http://en.wikipedia.org/wiki/BioPerl#cite_ref-12" style="text-decoration: none; color: rgb(11, 0, 128); background: none;"><span class="cite-accessibility-label" style="top: -99999px; clip: rect(1px 1px 1px 1px); overflow: hidden; position: absolute !important; padding: 0px !important; border: 0px !important; height: 1px !important; width: 1px !important; -webkit-user-select: none;">Jump up</span>^</a></b></span>&nbsp;<span class="reference-text"><span class="citation journal" style="word-wrap: break-word;">Landsteiner, B. R.; Olson, M. R.; Rutherford, R. (2005).&nbsp;<a rel="nofollow" class="external text" href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160193" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">&quot;Current Comparative Table (CCT) automates customized searches of dynamic biological databases&quot;</a>.&nbsp;<i>Nucleic Acids Research</i>&nbsp;<b>33</b>&nbsp;(Web Server issue): W770&ndash;W773.&nbsp;<a href="http://en.wikipedia.org/wiki/Digital_object_identifier" title="Digital object identifier" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">doi</a>:<a rel="nofollow" class="external text" href="http://dx.doi.org/10.1093%2Fnar%2Fgki432" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">10.1093/nar/gki432</a>.<a href="http://en.wikipedia.org/wiki/PubMed_Central" title="PubMed Central" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">PMC</a>&nbsp;<a rel="nofollow" class="external text" href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160193" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">1160193</a>.&nbsp;<a href="http://en.wikipedia.org/wiki/PubMed_Identifier" title="PubMed Identifier" class="mw-redirect" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">PMID</a>&nbsp;<a rel="nofollow" class="external text" href="http://www.ncbi.nlm.nih.gov/pubmed/15980582" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">15980582</a>.</span>&nbsp;<span class="plainlinks noprint" style="font-size: smaller;"><a class="external text" href="http://en.wikipedia.org/w/index.php?title=Template:Cite_doi/10.1093.2Fnar.2Fgki432&amp;action=edit&amp;editintro=Template:Cite_doi/editintro2" style="text-decoration: none; color: rgb(102, 51, 102); padding: 0px !important; background: none !important;">edit</a></span></span></li>
    <li id="cite_note-13" style="margin-bottom: 0.1em; -webkit-column-break-inside: avoid; page-break-inside: avoid;"><span class="mw-cite-backlink" style="-webkit-user-select: none;"><b><a href="http://en.wikipedia.org/wiki/BioPerl#cite_ref-13" style="text-decoration: none; color: rgb(11, 0, 128); background: none;"><span class="cite-accessibility-label" style="top: -99999px; clip: rect(1px 1px 1px 1px); overflow: hidden; position: absolute !important; padding: 0px !important; border: 0px !important; height: 1px !important; width: 1px !important; -webkit-user-select: none;">Jump up</span>^</a></b></span>&nbsp;<span class="reference-text"><span class="citation journal" style="word-wrap: break-word;">Llabr&eacute;s, M.; Rocha, J.; Rossell&oacute;, F.; Valiente, G. (2006). &quot;On the Ancestral Compatibility of Two Phylogenetic Trees with Nested Taxa&quot;.&nbsp;<i>Journal of Mathematical Biology</i>&nbsp;<b>53</b>&nbsp;(3): 340&ndash;364.&nbsp;<a href="http://en.wikipedia.org/wiki/Digital_object_identifier" title="Digital object identifier" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">doi</a>:<a rel="nofollow" class="external text" href="http://dx.doi.org/10.1007%2Fs00285-006-0011-4" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">10.1007/s00285-006-0011-4</a>.&nbsp;<a href="http://en.wikipedia.org/wiki/PubMed_Identifier" title="PubMed Identifier" class="mw-redirect" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">PMID</a>&nbsp;<a rel="nofollow" class="external text" href="http://www.ncbi.nlm.nih.gov/pubmed/16823581" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">16823581</a>.</span>&nbsp;<span class="plainlinks noprint" style="font-size: smaller;"><a class="external text" href="http://en.wikipedia.org/w/index.php?title=Template:Cite_doi/10.1007.2Fs00285-006-0011-4&amp;action=edit&amp;editintro=Template:Cite_doi/editintro2" style="text-decoration: none; color: rgb(102, 51, 102); padding: 0px !important; background: none !important;">edit</a></span></span></li>
    <li id="cite_note-14" style="margin-bottom: 0.1em; -webkit-column-break-inside: avoid; page-break-inside: avoid;"><span class="mw-cite-backlink" style="-webkit-user-select: none;"><b><a href="http://en.wikipedia.org/wiki/BioPerl#cite_ref-14" style="text-decoration: none; color: rgb(11, 0, 128); background: none;"><span class="cite-accessibility-label" style="top: -99999px; clip: rect(1px 1px 1px 1px); overflow: hidden; position: absolute !important; padding: 0px !important; border: 0px !important; height: 1px !important; width: 1px !important; -webkit-user-select: none;">Jump up</span>^</a></b></span>&nbsp;<span class="reference-text"><span class="citation journal" style="word-wrap: break-word;">Pampanwar, V.; Engler, F.; Hatfield, J.; Blundy, S.; Gupta, G.; Soderlund, C. (2005).&nbsp;<a rel="nofollow" class="external text" href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1104167" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">&quot;FPC Web Tools for Rice, Maize, and Distribution&quot;</a>.&nbsp;<i>Plant Physiology</i>&nbsp;<b>138</b>&nbsp;(1): 116&ndash;126.<a href="http://en.wikipedia.org/wiki/Digital_object_identifier" title="Digital object identifier" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">doi</a>:<a rel="nofollow" class="external text" href="http://dx.doi.org/10.1104%2Fpp.104.056291" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">10.1104/pp.104.056291</a>.&nbsp;<a href="http://en.wikipedia.org/wiki/PubMed_Central" title="PubMed Central" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">PMC</a>&nbsp;<a rel="nofollow" class="external text" href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1104167" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">1104167</a>.&nbsp;<a href="http://en.wikipedia.org/wiki/PubMed_Identifier" title="PubMed Identifier" class="mw-redirect" style="text-decoration: none; color: rgb(11, 0, 128); background: none;">PMID</a>&nbsp;<a rel="nofollow" class="external text" href="http://www.ncbi.nlm.nih.gov/pubmed/15888684" style="text-decoration: none; color: rgb(102, 51, 102); padding-right: 13px; background: linear-gradient(transparent, transparent) 100% 50% no-repeat, url(data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23fff%22%20stroke%3D%22%2306c%22%2F%3E%3Cg%3E%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%2306f%22%2F%3E%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23fff%22%2F%3E%3C%2Fg%3E%3C%2Fg%3E%3C%2Fsvg%3E) 100% 50%;">15888684</a>.</span>&nbsp;<span class="plainlinks noprint" style="font-size: smaller;"><a class="external text" href="http://en.wikipedia.org/w/index.php?title=Template:Cite_doi/10.1104.2Fpp.104.056291&amp;action=edit&amp;editintro=Template:Cite_doi/editintro2" style="text-decoration: none; color: rgb(102, 51, 102); padding: 0px !important; background: none !important;">edit</a></span></span></li>
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