View source for Bioinformatics 1st semester 2015/Yoon Changhan

<p>Bioinformatics 1st semester 2015</p>

<p>&nbsp;What I learned in this class is...</p>

<p>&nbsp;Biology is questions.</p>

<p>&nbsp;[[Biology learning procedure]]</p>

<p>&nbsp;[[What are good motivations for an active participation in classes and research?]]</p>

<p>&nbsp;</p>

<h1>Principles of Bioinformatics</h1>

<p><em>What is Biology?</em></p>

<p><em>What is Bioinformatics?&nbsp;</em></p>

<p>&nbsp;</p>

<h2>&nbsp;Bioinformatics is biology.</h2>

<p><strong>&nbsp;</strong>Biology is a&nbsp;study to&nbsp;aim to understand what life is. The essence of life is information processing. Therefore, bioinformatics, the study of life forms using informatics methods is the key of life science.</p>

<h2>&nbsp;The technical definition:</h2>

<p>Bioinformatics is a discipline of science that analyses, seeks understanding&nbsp;and models the whole life as an information processing phenomenon utilizing energy with methods from philosophy, mathmatics and computer science using measurable biological experimental&nbsp;data.</p>

<p>&nbsp;</p>

<h1>Bioprogramming</h1>

<p>What is bioprogramming?</p>

<p><a href="http://biolecture.org/index.php/Bioprogramming">http://biolecture.org/index.php/Bioprogramming</a></p>

<h2>&nbsp;Definition</h2>

<p>&nbsp;Bioprogramming is all the programming activities for analyzing biological data.</p>

<p>&nbsp;</p>

<h1>Genomics</h1>

<h2>&nbsp;Definition</h2>

<p>&nbsp;<a href="http://en.wikipedia.org/wiki/Genomics">http://en.wikipedia.org/wiki/Genomics</a></p>

<p>&nbsp;<strong>Genomics</strong> is a discipline in <a href="http://en.wikipedia.org/wiki/Genetics" title="Genetics">genetics</a> that applies <a href="http://en.wikipedia.org/wiki/Recombinant_DNA" title="Recombinant DNA">recombinant DNA</a>, <a href="http://en.wikipedia.org/wiki/DNA_sequencing" title="DNA sequencing">DNA sequencing</a> methods, and <a href="http://en.wikipedia.org/wiki/Bioinformatics" title="Bioinformatics">bioinformatics</a> to sequence, assemble, and analyze the function and structure of <a href="http://en.wikipedia.org/wiki/Genome" title="Genome">genomes</a> (the <em>complete</em> set of DNA within a single cell of an organism).</p>

<p>&nbsp;&nbsp;</p>

<p>&nbsp;</p>

<h1>Transcriptomics</h1>

<p>&nbsp;What is transcriptomics?</p>

<p>&nbsp;Relationship between genomics and transcriptomics</p>

<p>&nbsp;What are mRNAs?</p>

<p>&nbsp;How to measure RNA expression?</p>

<p>&nbsp;Relationship between Transcriptome and Proteome.</p>

<p>&nbsp;What is a UTR?</p>

<p>&nbsp;What is ncRNA ?</p>

<p>&nbsp;What is poly A ?</p>

<h2>&nbsp;Definition&nbsp;</h2>

<p>&nbsp; &nbsp;<a href="http://en.wikipedia.org/wiki/Transcriptomics#Applications">http://en.wikipedia.org/wiki/Transcriptomics#Applications</a></p>

<p>&nbsp; Transcriptomics is a study that analyses, seeks understanding, and models the whole life by&nbsp;utilizing transcriptome.</p>

<h2>&nbsp;What is transcriptome?</h2>

<p>&nbsp;Transcriptome is&nbsp;the set of all RNA molecules</p>

<h1>Proteomics</h1>

<p>&nbsp;What is proteome?</p>

<p>&nbsp;Relationship between genomics, transcriptomics, and proteomcs?</p>

<h2>&nbsp;Definition</h2>

<p>&nbsp; <a href="http://en.wikipedia.org/wiki/Proteomics">http://en.wikipedia.org/wiki/Proteomics</a></p>

<p>&nbsp;</p>

<h1>Epigenomics&nbsp;</h1>

<h2>&nbsp;Definition</h2>

<p>&nbsp;<a href="http://en.wikipedia.org/wiki/Epigenomics">http://en.wikipedia.org/wiki/Epigenomics</a></p>

<h1>Canceromics and Geromics</h1>

<p>What is cancer?&nbsp;</p>

<p>What is the origin of cancer?</p>

<p><a href="https://www.youtube.com/watch?v=_M5pKs1ILxI">https://www.youtube.com/watch?v=_M5pKs1ILxI</a></p>

<p>Why do we have cancer?</p>

<p>How do we detect cancer?</p>

<p>How do we cure cancer?</p>

<p>What is aging?</p>

<p>Why do&nbsp;we get old?</p>

<p>How do we measure biological age?</p>

<p>The problem of cancer and&nbsp;aging.</p>

<h2>&nbsp; Cancer</h2>

<p>&nbsp;<a href="http://en.wikipedia.org/wiki/Cancer">http://en.wikipedia.org/wiki/Cancer</a></p>

<h3>&nbsp;&nbsp;Definition</h3>

<p>&nbsp;&nbsp;Canceromics is the study of cancer which have questions about cancer,&nbsp;seeks understanding from measurable data,&nbsp;models cancer, and find&nbsp;the&nbsp;answer.&nbsp;</p>

<p>&nbsp;&nbsp;Cancer is a group of diseases involving abnormal cell growth with the potetial to invade or spread to other parts of the body.</p>

<h3>&nbsp; Origin of Cancer</h3>

<p>&nbsp;</p>

<h2>&nbsp;Aging</h2>

<h3>&nbsp; Definition</h3>

<p>&nbsp; Aging is process of becoming older. It represents the accumulation of changes in a person over time.</p>

<p>&nbsp;&nbsp;Geromics is the study of aging. Its nickname is gerontology. Geromics aims to study the whole changing process in biological organisms, especially aging.</p>