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<p>&nbsp;</p> <table border="0" cellpadding="0" cellspacing="0" style="border-collapse:collapse"> <tbody> <tr> <td colspan="7" style="height: 16.5pt; width: 505.5pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center; line-height: 160%"><strong><span style="color:black; font-size:14pt">Syllabus</span></strong></div> </td> </tr> <tr> <td colspan="3" style="height: 18.75pt; width: 255pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><strong><span style="color:black">Course Information&nbsp; Bioinformatics</span></strong></div> </td> <td colspan="4" style="height: 18.75pt; width: 250.5pt; background-color: transparent"> <p><strong><span style="color:black">Instructor Information [[Dugwoo Nam]] &amp; [[Jong Bhak]]</span></strong></p> </td> </tr> <tr> <td style="height: 27.9pt; width: 120.75pt"> <p style="text-align: center"><span style="color:black; font-size:9pt">Course Code</span></p> </td> <td colspan="2" style="height: 27.9pt; width: 134.25pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center; line-height: 160%"><span style="font-size:8.5pt">BIO43101</span></div> </td> <td style="height: 27.9pt; width: 81pt"> <div style="word-break: keep-all; text-align: center; line-height: 160%"><span style="color:black; font-size:9pt">Instructor</span></div> </td> <td colspan="3" style="height: 27.9pt; width: 169.5pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center; line-height: 160%"><span style="color:black; font-size:9pt">Dugwoo Nam,</span></div> <div style="word-break: keep-all; text-align: center; line-height: 160%"><span style="color:black; font-size:9pt">[[Jong Bhak]]</span></div> </td> </tr> <tr> <td style="height: 27.9pt; width: 120.75pt"> <p style="text-align: center"><span style="color:black; font-size:9pt">Course Title</span></p> </td> <td colspan="2" style="height: 27.9pt; width: 134.25pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center; line-height: 160%"><span style="color:black; font-size:9pt">Bioinformatics</span></div> </td> <td style="height: 27.9pt; width: 81pt"> <div style="word-break: keep-all; text-align: center; line-height: 160%"><span style="color:black; font-size:9pt">Office</span></div> </td> <td colspan="3" style="height: 27.9pt; width: 169.5pt; background-color: transparent"> <p><span style="font-size:9pt">Room 701-8, EB1 (DN)</span></p> <p><span style="color:black; font-size:9pt">Room 215, Bldg 103 (JB)</span></p> </td> </tr> <tr> <td style="height: 1.4pt; width: 120.75pt"> <div style="word-break: keep-all; text-align: center; line-height: 160%"><span style="color:black; font-size:9pt">Year/Semester</span></div> </td> <td colspan="2" style="height: 1.4pt; width: 134.25pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center; line-height: 160%"><span style="color:black; font-size:9pt">2015/1st</span></div> </td> <td style="height: 1.4pt; width: 81pt"> <div style="word-break: keep-all; text-align: center; line-height: 160%"><span style="color:black; font-size:9pt">Telephone</span></div> </td> <td colspan="3" style="height: 1.4pt; width: 169.5pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center; line-height: 160%"><span style="color:black; font-size:9pt">010 4644 6754 (JB)</span></div> </td> </tr> <tr> <td style="height: 27.9pt; width: 120.75pt"> <div style="word-break: keep-all; text-align: center; line-height: 160%"><span style="color:black; font-size:9pt">School</span></div> </td> <td colspan="2" style="height: 27.9pt; width: 134.25pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center; line-height: 160%"><span style="color:black; font-size:9pt">SLS</span></div> </td> <td style="height: 27.9pt; width: 81pt"> <div style="word-break: keep-all; text-align: center; line-height: 160%"><span style="color:black; font-size:9pt">E-mail</span></div> </td> <td colspan="3" style="height: 27.9pt; width: 169.5pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center; line-height: 160%"><span style="color:black; font-size:9pt"><a href="mailto:dougnam@unist.ac.kr">dougnam@unist.ac.kr</a> (DN)</span></div> <div style="word-break: keep-all; text-align: center; line-height: 160%"><span style="color:black; font-size:9pt"><a href="mailto:jongbhak@gmail.com">jongbhak@gmail.com</a> (JB)</span></div> </td> </tr> <tr> <td style="height: 1.4pt; width: 120.75pt"> <p style="text-align: center"><span style="color:black; font-size:9pt">Course Classification</span></p> </td> <td colspan="2" style="height: 1.4pt; width: 134.25pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center; line-height: 160%"><span style="font-size:8.5pt">TE-BIO/TE-BME/TE-BMS</span></div> </td> <td style="height: 1.4pt; width: 81pt"> <p style="text-align: center"><span style="color:black; font-size:9pt">Office Hours</span></p> </td> <td colspan="3" style="height: 1.4pt; width: 169.5pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center; line-height: 160%"><span style="color:black; font-size:9pt">TBA</span></div> </td> </tr> <tr> <td style="height: 1.4pt; width: 120.75pt"> <p style="text-align: center"><span style="color:black; font-size:9pt">Classroom/Class Time</span></p> </td> <td colspan="2" style="height: 1.4pt; width: 134.25pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center; line-height: 160%"><span style="color:black; font-size:9pt">FRI 13:00-15:30 (NSB S205)</span></div> </td> </tr> <tr> <td style="height: 1.4pt; width: 120.75pt"> <p style="text-align: center"><span style="color:black; font-size:9pt">Grading Type</span></p> </td> <td colspan="2" style="height: 1.4pt; width: 134.25pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center; line-height: 160%"><span style="color:black; font-size:9pt">Letter grade</span></div> </td> </tr> <tr> <td colspan="3" style="height: 17.25pt; width: 255pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><strong><span style="color:black; font-size:11pt">Course Objectives &amp; Description </span></strong></div> </td> </tr> <tr> <td colspan="7" style="height: 106.35pt; width: 505.5pt; background-color: transparent"> <p>Bioinformatics course contains introductory information in how to process biological data using computers.</p> <p>The first part of the course taught by Dougu Nam covers the basic computational methods used for biological data analysis. During the class, students will learn the concepts by short lectures and hands-on experiences. So, please bring a laptop computer to the class from the second week.</p> <div style="word-break: keep-all; line-height: 160%">&nbsp;</div> <p>The second part of the course taught by Jong Bhak will focus on:</p> <p>1)&nbsp;&nbsp;&nbsp;&nbsp; What Bioinformatics is</p> <p>2)&nbsp;&nbsp;&nbsp;&nbsp; How to independently read research papers</p> <p>3)&nbsp;&nbsp;&nbsp;&nbsp; How to critically analyze research papers and topics</p> <p>4)&nbsp;&nbsp;&nbsp;&nbsp; How to choose a research topic in bioinformatics and design an experiment and perform research</p> <p>5)&nbsp;&nbsp;&nbsp;&nbsp; How to write research report(paper) to make the results known to the public.</p> <p>6)&nbsp;&nbsp;&nbsp;&nbsp; The course will be done through active action-oriented learning method(AAO)</p> <p>7)&nbsp;&nbsp;&nbsp;&nbsp; Students are required to motivate themselves and bring their research topics after reading research papers.</p> </td> </tr> <tr> <td style="height: 12.75pt; width: 120.75pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">Grading</span></div> </td> </tr> <tr> <td colspan="7" style="height: 55.85pt; width: 505.5pt; background-color: transparent"> <p><span style="color:red">Midterm( Two tests:&nbsp;50 %) / Final Exam(&nbsp;Team project: 50%)</span></p> </td> </tr> <tr> <td style="height: 12.75pt; width: 120.75pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> <td style="height: 12.75pt; width: 47.25pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> <td style="height: 12.75pt; width: 87pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> <td style="height: 12.75pt; width: 81pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> <td colspan="2" style="height: 12.75pt; width: 84pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> <td style="height: 12.75pt; width: 84.75pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> </tr> <tr> <td colspan="7" style="height: 12.75pt; width: 505.5pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">Text</span></div> </td> </tr> <tr> <td colspan="2" style="height: 15.75pt; width: 168pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">Category</span></div> </td> <td colspan="3" style="height: 15.75pt; width: 210pt; background-color: transparent"> <p><span style="color:red">Book and PPT files, on-line links</span></p> </td> <td colspan="2" style="height: 15.75pt; width: 126.75pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> </tr> <tr> <td colspan="2" style="height: 15.75pt; width: 168pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">Title</span></div> </td> <td colspan="3" style="height: 15.75pt; width: 210pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:red">Bioinformatics</span></div> </td> <td colspan="2" style="height: 15.75pt; width: 126.75pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> </tr> <tr> <td colspan="2" style="height: 15.75pt; width: 168pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">Author</span></div> </td> <td colspan="3" style="height: 15.75pt; width: 210pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:red">Jong Bhak</span></div> </td> <td colspan="2" style="height: 15.75pt; width: 126.75pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> </tr> <tr> <td colspan="2" style="height: 15.75pt; width: 168pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">ISBN</span></div> </td> <td colspan="3" style="height: 15.75pt; width: 210pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> <td colspan="2" style="height: 15.75pt; width: 126.75pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> </tr> <tr> <td colspan="2" style="height: 15.75pt; width: 168pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">Remarks</span></div> </td> <td colspan="3" style="height: 15.75pt; width: 210pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> <td colspan="2" style="height: 15.75pt; width: 126.75pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> </tr> <tr> <td colspan="2" style="height: 15.75pt; width: 168pt; background-color: transparent"> <p><span style="color:black">Course Reserves Designation</span></p> </td> <td colspan="3" style="height: 15.75pt; width: 210pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> <td colspan="2" style="height: 15.75pt; width: 126.75pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> </tr> <tr> <td style="height: 15.75pt; width: 120.75pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">References</span></div> </td> </tr> <tr> <td colspan="2" style="height: 15.75pt; width: 168pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">Category</span></div> </td> <td colspan="2" style="height: 15.75pt; width: 168pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:red">Book, on-line links</span></div> </td> <td colspan="2" style="height: 15.75pt; width: 84pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> <td style="height: 15.75pt; width: 84.75pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> </tr> <tr> <td colspan="2" style="height: 15.75pt; width: 168pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">Title</span></div> </td> <td colspan="2" style="height: 15.75pt; width: 168pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:red">Bioinformatics</span></div> </td> <td colspan="2" style="height: 15.75pt; width: 84pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> <td style="height: 15.75pt; width: 84.75pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> </tr> <tr> <td colspan="2" style="height: 15.75pt; width: 168pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">Author</span></div> </td> <td colspan="2" style="height: 15.75pt; width: 168pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:red">Jong Bhak</span></div> </td> <td colspan="2" style="height: 15.75pt; width: 84pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> <td style="height: 15.75pt; width: 84.75pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> </tr> <tr> <td colspan="2" style="height: 15.75pt; width: 168pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">ISBN</span></div> </td> <td colspan="2" style="height: 15.75pt; width: 168pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> <td colspan="2" style="height: 15.75pt; width: 84pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> <td style="height: 15.75pt; width: 84.75pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> </tr> <tr> <td colspan="2" style="height: 15.75pt; width: 168pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">Remarks</span></div> </td> <td colspan="2" style="height: 15.75pt; width: 168pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> <td colspan="2" style="height: 15.75pt; width: 84pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> <td style="height: 15.75pt; width: 84.75pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> </tr> <tr> <td colspan="2" style="height: 15.75pt; width: 168pt; background-color: transparent"> <p><span style="color:black">Course Reserves Designation</span></p> </td> <td colspan="2" style="height: 15.75pt; width: 168pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> <td colspan="2" style="height: 15.75pt; width: 84pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> <td style="height: 15.75pt; width: 84.75pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><span style="color:black">&nbsp;</span></div> </td> </tr> </tbody> </table> <div style="word-break: keep-all; line-height: 160%">&nbsp;</div> <div style="word-break: keep-all; line-height: 160%"><span style="color:black; font-size:12pt">Weekly Schedule</span></div> <p>&nbsp;</p> <table border="0" cellpadding="0" cellspacing="0" style="border-collapse:collapse"> <tbody> <tr> <td style="height: 14.7pt; width: 42.75pt"> <div style="word-break: keep-all; text-align: center; line-height: 160%"><span style="color:black">Week</span></div> </td> <td style="height: 14.7pt; width: 462pt"> <div style="word-break: keep-all; text-align: center; line-height: 160%"><span style="color:black">Contents</span></div> </td> </tr> <tr> <td style="height: 35.65pt; width: 42.75pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center"><span style="color:black">01</span></div> </td> <td style="height: 35.65pt; width: 462pt; background-color: transparent"> <p style="text-align: left">Introduction to Bioinformatics, Introduction to Microarray, RNA-seq</p> </td> </tr> <tr> <td style="height: 35.65pt; width: 42.75pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center"><span style="color:black">02</span></div> </td> <td style="height: 35.65pt; width: 462pt; background-color: transparent"> <p>Microarray &amp; gene data analysis I: Normalization, Identification of DEGs (R language), Gene list analysis with DAVID and STRING(web)</p> </td> </tr> <tr> <td style="height: 35.65pt; width: 42.75pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center"><span style="color:black">03</span></div> </td> <td style="height: 35.65pt; width: 462pt; background-color: transparent"> <p>Microarray &amp; gene data analysis II: Clustering, (R, cluster, treeview), Dimension Reduction (PCA), survival analysis</p> </td> </tr> <tr> <td style="height: 35.65pt; width: 42.75pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center"><span style="color:black">04</span></div> </td> <td style="height: 35.65pt; width: 462pt; background-color: transparent"> <div style="line-height: 115%">Test 1</div> </td> </tr> <tr> <td style="height: 35.65pt; width: 42.75pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center"><span style="color:black">05</span></div> </td> <td style="height: 35.65pt; width: 462pt; background-color: transparent"> <p style="text-align: left">Gene-set and pathway analysis with GSEA, Introduction to classification analysis (SVM)</p> </td> </tr> <tr> <td style="height: 35.65pt; width: 42.75pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center"><span style="color:black">06</span></div> </td> <td style="height: 35.65pt; width: 462pt; background-color: transparent"> <div style="line-height: 115%">RNA-seq, ChIP-seq data analysis</div> </td> </tr> <tr> <td style="height: 35.65pt; width: 42.75pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center"><span style="color:black">07</span></div> </td> <td style="height: 35.65pt; width: 462pt; background-color: transparent"> <p style="text-align: left">Introduction to NCBI databases: data and literature search</p> </td> </tr> <tr> <td style="height: 35.65pt; width: 42.75pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center"><span style="color:black">08</span></div> </td> <td style="height: 35.65pt; width: 462pt; background-color: transparent"> <div style="word-break: keep-all; text-align: left"><span style="color:black">Test 2</span></div> </td> </tr> <tr> <td style="height: 35.65pt; width: 42.75pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center"><span style="color:black">09</span></div> </td> <td style="height: 35.65pt; width: 462pt; background-color: transparent"> <div style="word-break: keep-all; text-align: left"><span style="color:black">&nbsp;[[Principles of Bioinformatics]]</span></div> </td> </tr> <tr> <td style="height: 35.65pt; width: 42.75pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center"><span style="color:black">10</span></div> </td> <td style="height: 35.65pt; width: 462pt; background-color: transparent"> <div style="word-break: keep-all; text-align: left"><span style="color:black">&nbsp;[[Bioprogramming]]</span></div> </td> </tr> <tr> <td style="height: 35.65pt; width: 42.75pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center"><span style="color:black">11</span></div> </td> <td style="height: 35.65pt; width: 462pt; background-color: transparent"> <div style="word-break: keep-all; text-align: left"><span style="color:black">&nbsp;[[Genomics]]</span></div> </td> </tr> <tr> <td style="height: 35.65pt; width: 42.75pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center"><span style="color:black">12</span></div> </td> <td style="height: 35.65pt; width: 462pt; background-color: transparent"> <div style="word-break: keep-all; text-align: left"><span style="color:black">&nbsp;[[Transcriptomics]]</span></div> </td> </tr> <tr> <td style="height: 35.65pt; width: 42.75pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center"><span style="color:black">13</span></div> </td> <td style="height: 35.65pt; width: 462pt; background-color: transparent"> <div style="word-break: keep-all; text-align: left"><span style="color:black">&nbsp;[[Proteomics]]</span></div> </td> </tr> <tr> <td style="height: 35.65pt; width: 42.75pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center"><span style="color:black">14</span></div> </td> <td style="height: 35.65pt; width: 462pt; background-color: transparent"> <div style="word-break: keep-all; text-align: left"><span style="color:black">&nbsp;[[Epigenomics]]</span></div> </td> </tr> <tr> <td style="height: 35.65pt; width: 42.75pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center"><span style="color:black">15</span></div> </td> <td style="height: 35.65pt; width: 462pt; background-color: transparent"> <div style="word-break: keep-all; text-align: left"><span style="color:black">&nbsp;[[Canceromics and Geromics]]</span></div> </td> </tr> </tbody> </table> <div>&nbsp;</div> <hr /> <p>[[UNIST Bioinformatics course]]&nbsp; [http://bioinformatics.ws Bioinformatics.ws]</p> <p>&nbsp;</p> <p>&nbsp;</p>

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