View source for 3. Pick 5 protein sequences and predict their secondary structures using available prediction programs

<p>I used Jpred 4 program <a href="http://www.compbio.dundee.ac.uk/jpred4/index.html">http://www.compbio.dundee.ac.uk/jpred4/index.html</a></p>

<p>&#39;H&#39; - Helix, &#39;E&#39; - Extended, &#39;B&#39; - Buried,&nbsp;&#39;-&#39; - other types</p>

<p>DSCR1(RCAN1)&nbsp;- Down Syndrome Critical Region 1, Regulator of Calcineurin 1</p>

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<pre>
<code>MVYAKFESLFRTYDKDITFQYFKSFKRVRINFSNPFSAADARLQLHKTEFLGKEMKLYFAQTLHIGSSHLAPPNPDKQFLISPPASPPVGWKQVEDATPVINYDLLYAISKLGPGEKYELHAATDTTPSVVVHVCESDQEKEEEEEMERMRRPKPKIIQTRRPEYTPIHLS
-HHHHHHHHHH-----EEEEE-----EEEEEE--HHHHHHHHHHH--------EEEEEE-------------------------------EEE---------HHHHHHHHH-------EE--------EEEEEE---------------------E---------------</code></pre>

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<p>FMRP - Fragile X syndrome Mental Retardation Protein</p>

<pre>
<code>MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGYNKDINESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSKRAHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPNSLPSNNSRVGPNAPEEKKHLDIKENSTHFSQPNSTKVQRVLVASSVVAGESQKPELKAWQGMVPFVFVGTKDSIANATVLLDYHLNYLKEVDQLRLERLQIDEQLRQIGASSRPPPNRTDKEKSYVTDDGQGMGRGSRPYRNRGHGRRGPGYTSGTNSEASNASETESDHRDELSDWSLAPTEEERESFLRRGDGRRRGGGGRGQGGRGRGGGFKGNDDHSRTDNRPRNPREAKGRTTDGSLQIRVDCNNERSVHTKTLQNTSSEGSRLRTGKDRNQKKEKPDSVDGQQPLVNGVP
---EEEEEE-----EEEEEEEEE---EEEEEE-------------------------------EEEEEE----------EEEEEEEE----EEEEEE-------EEEEE----------------EEEEEEE--HHHHHHHH-HHHHHHHHH---EEEEEE-----EEEEEE-----EEEEEH-HEEE----HHHHHHHHHHHHHHHHHHHHHHH----EEEEE-----HHHH------HHHHHHH----EEEE------EEEEEE--HHHHHHHHHHHHHHHEEEEE------EEE----HHHHHHH----EEEEEE-------------------HHHHHHHHHHHHHHHHHHH------EEE----------------------------------EEEEEEE--HHHHHHHHHHHHHHHHHHH-HHHHHEE-------------------EE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------</code></pre>

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<p>Death associated protein kinase 3</p>

<pre>
<code>MSTFRQEDVEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRRRNVRGEDSGRKPERRRLKTTRLKEYTIKSHSSLPPNNSYADFERFSKVLEEAAAAEEGLRELQRSRRLCHEDVEALAAIYEEKEAWYREESDSLGQDLRRLRQELLKTEALKRQAQEEAKGALLGTSGLKRRFSRLENRYEALAKQVASEMRFVQDLVRALEQEKLQGVECGLR
------------EEEEEEEEE---EEEEEEEE----EEEEEEEEE--------HHHHHHHHHHHHHHHHH-----EEEEEEEE----EEEEEEEE----HHHHHHHH-----HHHHHHHHHHHHHHHHHHHH---EEE-----EEEE---------EEEEE---EEEE----EEEEE------HHHHHH----------HHHHHHHHHHHHH---------HHHHHHHHH---------------HHHHHHHHHHH---------HHHHHH---------------------------------------------------------------------HHHHHH------------HHHH-----------HHHHHHHHH-----HHHHHH---------------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-----------</code></pre>

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<p>Calcineurin</p>

<pre>
<code>MGVEIETISPGDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE
--EEEEEEEE-----------EEEEEEEEEE----EEEE------EEEEEE----HHHHHHHHH-------EEEEEE--------------------EEEEEEEEE--</code></pre>

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<p>Fc region of Immunoglobluin G</p>

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