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Created page with "<h2> Protein Pattern Analysis</h2> <h2>Motif, Pattern, Profile, Signature</h2> <p> </p> <h2>1. PROSITE (prosite.expasy.org)</h2> <p><sup>1)</sup>A protein database ..."
<h2> Protein Pattern Analysis</h2>
<h2>Motif, Pattern, Profile, Signature</h2>
<p> </p>
<h2>1. PROSITE (prosite.expasy.org)</h2>
<p><sup>1)</sup>A protein database which consists of the protein families, domains, functional sites, amino acid patterns and profiles.</p>
<p>They are manually curated by a team of Swiss Institute of Bioinformatics</p>
<h2>2. ISREC profile (<a href="http://www.bioinf.man.ac.uk/dbbrowser/bioactivity/newpfscan.html">http://www.bioinf.man.ac.uk/dbbrowser/bioactivity/newpfscan.html</a>)</h2>
<p> </p>
<h2>3. BLOCKS (blocks.fhcrc.org)</h2>
<p> </p>
<h2>4. Pfam (pfam.xfam.ac.uk)</h2>
<p> </p>
<h2>5. PRINTS (bioinf.man.ac.uk/dbbrowser/PRINTS)</h2>
<p> </p>
<h3>Etc - PIR (pir.georgetown.edu/pirwww/index.shtml), PSI-BLAST(<a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on">http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on</a>)</h3>
<p>To search similarity among amino acid sequences . PIR - Protein Informatics Resourse , PSI - Position Specific Iterated</p>
<hr />
<h2> Protein Structure Analysis</h2>
<h2>1. SWISS-MODEL (swissmodel.expasy.org)</h2>
<h2>2. CPHmodels</h2>
<h2>3. CASP, Critical Assessment of Structure Prediction (predictioncenter.org)</h2>
<h2>Reference</h2>
<p>*** All these websites are listed in the book called 'Bioinformatics with bioperl' authored by Young-chang Kim</p>
<p>1) <a href="https://en.wikipedia.org/wiki/PROSITE">https://en.wikipedia.org/wiki/PROSITE</a></p>
<p> </p>
<p> </p>
<p>[[Seung-hoon Kim]]</p>
<h2>Motif, Pattern, Profile, Signature</h2>
<p> </p>
<h2>1. PROSITE (prosite.expasy.org)</h2>
<p><sup>1)</sup>A protein database which consists of the protein families, domains, functional sites, amino acid patterns and profiles.</p>
<p>They are manually curated by a team of Swiss Institute of Bioinformatics</p>
<h2>2. ISREC profile (<a href="http://www.bioinf.man.ac.uk/dbbrowser/bioactivity/newpfscan.html">http://www.bioinf.man.ac.uk/dbbrowser/bioactivity/newpfscan.html</a>)</h2>
<p> </p>
<h2>3. BLOCKS (blocks.fhcrc.org)</h2>
<p> </p>
<h2>4. Pfam (pfam.xfam.ac.uk)</h2>
<p> </p>
<h2>5. PRINTS (bioinf.man.ac.uk/dbbrowser/PRINTS)</h2>
<p> </p>
<h3>Etc - PIR (pir.georgetown.edu/pirwww/index.shtml), PSI-BLAST(<a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on">http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on</a>)</h3>
<p>To search similarity among amino acid sequences . PIR - Protein Informatics Resourse , PSI - Position Specific Iterated</p>
<hr />
<h2> Protein Structure Analysis</h2>
<h2>1. SWISS-MODEL (swissmodel.expasy.org)</h2>
<h2>2. CPHmodels</h2>
<h2>3. CASP, Critical Assessment of Structure Prediction (predictioncenter.org)</h2>
<h2>Reference</h2>
<p>*** All these websites are listed in the book called 'Bioinformatics with bioperl' authored by Young-chang Kim</p>
<p>1) <a href="https://en.wikipedia.org/wiki/PROSITE">https://en.wikipedia.org/wiki/PROSITE</a></p>
<p> </p>
<p> </p>
<p>[[Seung-hoon Kim]]</p>
