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From Biolecture.org
Created page with "<p>>Perl Code of PCNA</p> <p> </p> <p>[DNA sequence]</p> <p><span style="font-family:arial,helvetica,sans-serif">ATGTTCGAGGCGCGCCTGGTCCAGGGCTCCATCCTCAAGAAGGTGTTGGA..."
<p>>[[Perl Code of PCNA]]</p>
<p> </p>
<p>[DNA sequence]</p>
<p><span style="font-family:arial,helvetica,sans-serif">ATGTTCGAGGCGCGCCTGGTCCAGGGCTCCATCCTCAAGAAGGTGTTGGAGGCACTCAAGGACCTCATCAACGAGGCCTGCTGGGATATTAGCTCCAGCGGTGTAAACCTGCAGAGCATGGA</span></p>
<p><span style="font-family:arial,helvetica,sans-serif">CTCGTCCCACGTCTCTTTGGTGCAGCTCACCCTGCGGTCTGAGGGCTTCGACACCTACCGCTGCGACCGCAACCTGGCCATGGGCGTGAACCTCACCAGTATGTCCAAAATACTAAAATGCGC</span></p>
<p><span style="font-family:arial,helvetica,sans-serif">CGGCAATGAAGATATCATTACACTAAGGGCCGAAGATAACGCGGATACCTTGGCGCTAGTATTTGAAGCACCAAACCAGGAGAAAGTTTCAGACTATGAAATGAAGTTGATGGATTTAGATGTTG</span></p>
<p><span style="font-family:arial,helvetica,sans-serif">AACAACTTGGAATTCCAGAACAGGAGTACAGCTGTGTAGTAAAGATGCCTTCTGGTGAATTTGCATGTATATGCCGAGATCTCAGCCATATTGGAGATGCTGTTGTAATTTCCTGTGCAAAAGAC</span></p>
<p><span style="font-family:arial,helvetica,sans-serif">GGAGTGAAATTTTCTGCAAGTGGAGAACTTGGAAATGGAAACATTAAATTGTCACAGACAAGTAATGTCGATAAAGAGGAGGAAGCTGTTACCATAGAGATGAATGAACCAGTTCAACTAACTT</span></p>
<p><span style="font-family:arial,helvetica,sans-serif">TTGCACTGAGGTACCTGAACTTCTTTACAAAAGCCACTCCACTCTCTTCAACGGTGACACTCAGTATGTCTGCAGATGTACCCCTTGTTGTAGAGTATAAAATTGCGGATATGGGACACTTAAAAT</span></p>
<p><span style="font-family:arial,helvetica,sans-serif">ACTACTTGGCTCCCAAGATCGAGGATGAAGAAGGATCTTAG</span></p>
<p> </p>
<p>[Amino acid sequence]</p>
<p><span style="font-family:arial,helvetica,sans-serif">MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIP</span></p>
<p><span style="font-family:arial,helvetica,sans-serif">EQEYSCVVKMPSGEFACICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDE</span></p>
<p><span style="font-family:arial,helvetica,sans-serif">EGS</span></p>
<p> </p>
<p>[Second structure]</p>
<p>http://www.compbio.dundee.ac.uk/jpred4/results/jp_4Nu3t02/jp_4Nu3t02.results.html</p>
<p>Simple result : (H=alpha helix E=beta sheet)</p>
<p><code>------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HEEEE---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------EEEEEEE------EEEEEE-----EEEEEE----EEE---EEEEEE----EEEEEE---EEEE---EEEEEE-------------EE----------EEEEEEE-----EEEEEEEEEEEEEE------EE------EEEEE------------EEE-</code></p>
<p>__________________________________________________________________________________________________________________________________________________________________________________________</p>
<p>[[H.W.1]]</p>
<p> </p>
<p>[DNA sequence]</p>
<p><span style="font-family:arial,helvetica,sans-serif">ATGTTCGAGGCGCGCCTGGTCCAGGGCTCCATCCTCAAGAAGGTGTTGGAGGCACTCAAGGACCTCATCAACGAGGCCTGCTGGGATATTAGCTCCAGCGGTGTAAACCTGCAGAGCATGGA</span></p>
<p><span style="font-family:arial,helvetica,sans-serif">CTCGTCCCACGTCTCTTTGGTGCAGCTCACCCTGCGGTCTGAGGGCTTCGACACCTACCGCTGCGACCGCAACCTGGCCATGGGCGTGAACCTCACCAGTATGTCCAAAATACTAAAATGCGC</span></p>
<p><span style="font-family:arial,helvetica,sans-serif">CGGCAATGAAGATATCATTACACTAAGGGCCGAAGATAACGCGGATACCTTGGCGCTAGTATTTGAAGCACCAAACCAGGAGAAAGTTTCAGACTATGAAATGAAGTTGATGGATTTAGATGTTG</span></p>
<p><span style="font-family:arial,helvetica,sans-serif">AACAACTTGGAATTCCAGAACAGGAGTACAGCTGTGTAGTAAAGATGCCTTCTGGTGAATTTGCATGTATATGCCGAGATCTCAGCCATATTGGAGATGCTGTTGTAATTTCCTGTGCAAAAGAC</span></p>
<p><span style="font-family:arial,helvetica,sans-serif">GGAGTGAAATTTTCTGCAAGTGGAGAACTTGGAAATGGAAACATTAAATTGTCACAGACAAGTAATGTCGATAAAGAGGAGGAAGCTGTTACCATAGAGATGAATGAACCAGTTCAACTAACTT</span></p>
<p><span style="font-family:arial,helvetica,sans-serif">TTGCACTGAGGTACCTGAACTTCTTTACAAAAGCCACTCCACTCTCTTCAACGGTGACACTCAGTATGTCTGCAGATGTACCCCTTGTTGTAGAGTATAAAATTGCGGATATGGGACACTTAAAAT</span></p>
<p><span style="font-family:arial,helvetica,sans-serif">ACTACTTGGCTCCCAAGATCGAGGATGAAGAAGGATCTTAG</span></p>
<p> </p>
<p>[Amino acid sequence]</p>
<p><span style="font-family:arial,helvetica,sans-serif">MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIP</span></p>
<p><span style="font-family:arial,helvetica,sans-serif">EQEYSCVVKMPSGEFACICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDE</span></p>
<p><span style="font-family:arial,helvetica,sans-serif">EGS</span></p>
<p> </p>
<p>[Second structure]</p>
<p>http://www.compbio.dundee.ac.uk/jpred4/results/jp_4Nu3t02/jp_4Nu3t02.results.html</p>
<p>Simple result : (H=alpha helix E=beta sheet)</p>
<p><code>------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HEEEE---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------EEEEEEE------EEEEEE-----EEEEEE----EEE---EEEEEE----EEEEEE---EEEE---EEEEEE-------------EE----------EEEEEEE-----EEEEEEEEEEEEEE------EE------EEEEE------------EEE-</code></p>
<p>__________________________________________________________________________________________________________________________________________________________________________________________</p>
<p>[[H.W.1]]</p>
