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HW
,Created page with "<p><span style="font-size:20px">1. Learn Perl programming language and learn bioinformatics using it.</span></p> <p>a. Install and Learn BioPerl<br /> [[b. Make a Perl ..."
<p><span style="font-size:20px">1. Learn Perl programming language and learn bioinformatics using it.</span></p>
<p>[[a. Install and Learn BioPerl]]<br />
[[b. Make a Perl program translating 'all' combinations of triple bases into amino acids]]<br />
[[c. Pick 5 protein sequences and predict their secondary structures using available prediction programs]]<br />
[[d. Open and re-write one FASTA file containing one protein sequence of TERT]]<br />
[[e. Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file]]<br />
[[f. Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file]]<br />
[[g. In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc]]<br />
[[h. Align two protein sequences using a dynamic programming method in Perl]]<br />
[[i. Randomly generate five 100 AA long protein sequences and store them in a FASTA file]]<br />
[[j. Create a flat text file database of protein sequences with hash function in Perl]]</p>
<p>[[a. Install and Learn BioPerl]]<br />
[[b. Make a Perl program translating 'all' combinations of triple bases into amino acids]]<br />
[[c. Pick 5 protein sequences and predict their secondary structures using available prediction programs]]<br />
[[d. Open and re-write one FASTA file containing one protein sequence of TERT]]<br />
[[e. Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file]]<br />
[[f. Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file]]<br />
[[g. In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc]]<br />
[[h. Align two protein sequences using a dynamic programming method in Perl]]<br />
[[i. Randomly generate five 100 AA long protein sequences and store them in a FASTA file]]<br />
[[j. Create a flat text file database of protein sequences with hash function in Perl]]</p>
