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<a href="http://www.embl-heidelberg.de/srs/srsc?-info||ALI"><strong>3D-ALI</strong></a> - Database relating Proteins Structures and Sequences (see <a href="gopher://s-crim1.dl.ac.uk/00/EMBnet%20Bioinformation%20Resource%20UK/Data%20%26%20Software/databases/3d_ali/3d_ali.doc"><strong>Documentation</strong></a>) at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> <br />
<a href="http://www.embl-heidelberg.de/aaa.html"><strong>AA Analysis</strong> </a> - Protein Identification in SwissProt and PIR using Amino Acid Composition at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> <br /> <br /> <a href="http://expasy.hcuge.ch/ch2d/aacompi.html"><strong>AA CompIdent</strong></a> - Protein Identification in SwissProt using Amino Acid Composition at <a href="http://expasy.hcuge.ch/">ExPASy</a>, Switzerland <br /> <br /> <a href="http://expasy.hcuge.ch/ch2d/aacsim.html"><strong>AA CompSim</strong></a> - Compare the Amino Acid Composition of a SwissProt Entry with Other Entries at <a href="http://expasy.hcuge.ch/">ExPASy</a>, Switzerland <br /> <br /> <a href="http://chait-sgi.rockefeller.edu/cgi-bin/sequence/AA"><strong>AA Sequence Analysis</strong></a> - Multiple Analysis of a Native or Modified Amino Acid Sequence at <a href="http://www.rockefeller.edu/ru.home.html">Rockefeller U.</a> <br /> <br /> <a href="http://www.biochem.ucl.ac.uk/~martin/abs/seqtest.html"><strong>AbCheck</strong></a> - Test an Antibody Sequence Against the Kabat Database at <a href="http://www.biochem.ucl.ac.uk/">U. College-London</a>, UK <br /> <br /> <a href="http://genome.eerie.fr/fasta/align-query.html"><strong>ALIGN</strong></a> - Optimal Global Alignment of Two Sequences with No Short-cuts at <a href="http://genome.eerie.fr/home.html">EERIE-Nimes</a>, France and <a href="http://speedy.mips.biochem.mpg.de/www/programs/align.html"><strong>Align</strong></a> at <a href="http://speedy.mips.biochem.mpg.de/">MIPS</a>, Germany <br /> <br /> <a href="http://cbrg.inf.ethz.ch/subsection3_1_1.html"><strong>AllAll</strong></a> - Relationships in a Set of Related Peptides at <a href="http://cbrg.inf.ethz.ch/">ETH-Zürich</a>, Switzerland <br /> <br /> <a href="http://cbrg.inf.ethz.ch/subsection3_1_2.html"><strong>AllAllDB</strong></a> - Search the All-Against-All Database of SwissProt at <a href="http://cbrg.inf.ethz.ch/">ETH-Zürich</a>, Switzerland <br /> <br /> <a href="http://geoff.biop.ox.ac.uk/servers/amas_server.html"><strong>AMAS</strong></a> - Analysis of Protein Multiple Sequence Alignments at <a href="http://geoff.biop.ox.ac.uk/">U. Oxford</a>, UK <br /> <br /> <a href="http://www.embl-heidelberg.de/argos/ASC.21/asc2.html"><strong>ASC</strong></a> - Analytic Surface Calculation of PDB Protein Structures at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> <br /> <br /> <a href="http://mips11.mips.biochem.mpg.de/www/programs/atlas_per.html"><strong>ATLAS</strong></a> - Search DNA and Protein Sequence Databases at <a href="http://speedy.mips.biochem.mpg.de/">MIPS</a>, Germany <br /> <br /> <a href="http://kiwi.imgen.bcm.tmc.edu:8088/search-launcher/launcher.html"><strong>BCM Search Launcher</strong></a> at <a images="" alt="(W3)" href="http://www.bcm.tmc.edu/%3EBaylor%20College%20of%20Medicine%3C/a%3E%20%3Cimg%20src="></a><br /> <br />
<a images="" alt="(W3)" href="http://www.bcm.tmc.edu/%3EBaylor%20College%20of%20Medicine%3C/a%3E%20%3Cimg%20src="> </a><a href="http://dot.imgen.bcm.tmc.edu:9331/seq-search/protein-search.html"><strong>BEAUTY</strong></a> - BLAST Enhanced Alignment Utility <a href="http://dot.imgen.bcm.tmc.edu:9331/seq-search/Help/beauty.html"><strong>(see Documentation)</strong></a> at <a href="http://www.bcm.tmc.edu/">Baylor College of Medicine</a> <br />
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<a href="http://www.ocms.ox.ac.uk/~birney/palette.html"><strong>Biologist's Search Palette</strong></a> - Collection of Search Engines for Biological Databases at <a href="http://www.ocms.ox.ac.uk/">Oxford U.</a>, UK <br />
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<a href="http://dot.imgen.bcm.tmc.edu:9331/seq-search/Option/blastpat.html"><strong>BLASTPAT</strong></a> - BLAST-based Pattern Database Search (see <a href="http://dot.imgen.bcm.tmc.edu:9331/seq-search/Help/blastpat.html"><strong>Documentation</strong></a>) at <a href="http://gc.bcm.tmc.edu:8088/">Baylor College of Medicine</a> <br />
<a href="http://www.embl-heidelberg.de/searches/blitz_input.html"><strong>BLITZ</strong></a> (see <a href="http://www.ebi.ac.uk/searches/blitz_doc.html"><strong>Documentation</strong></a>) at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> and <a href="http://www.ebi.ac.uk/searches/blitz_input.html"><strong>BLITZ</strong></a> at <a href="http://www.ebi.ac.uk/">EBI</a>, UK <br />
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<a href="http://www.blocks.fhcrc.org/"><strong>BLOCKS</strong></a> - Database of Highly Conserved Regions in Proteins and <a href="gopher://klaatu.fhcrc.org/77/.indexes/.blocksindex/blocksindex"><strong>BLOCKS-WAIS</strong></a> at <a href="gopher://klaatu.fhcrc.org/">Fred Hutchinson Cancer Research Center</a>, <br /><a href="http://www.embl-heidelberg.de/srs/srsc?-info||BLOCKS"><strong>BLOCKS</strong></a> at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> and <br /><a href="http://www.public.iastate.edu/~pedro/blocks_query.html"><strong>BLOCKS-Search</strong></a> w/ search from <a href="http://www.cc.iastate.edu/welcome.html">Iowa State</a> <br />
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<a href="http://bimas.dcrt.nih.gov/sql/BMRBgate.html"><strong>BioMagResBank</strong></a> - A Database of NMR-Derived Protein Structures at <a href="http://bimas.dcrt.nih.gov/">BIMAS-NIH</a> <br />
<a href="http://expasy.hcuge.ch/sprot/enzyme.html"><strong>ENZYME</strong></a> - The Enzyme Data Bank at <a href="http://expasy.hcuge.ch/">ExPASy</a>, Switzerland <br />
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