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<p><img alt="" src="/ckfinder/userfiles/images/sorted.JPG" style="height:351px; width:199px" /></p>
<p><strong>Interpretation of the result</strong></p>
<p><img alt="" src="/ckfinder/userfiles/images/raw%20array.JPG" style="height:405px; width:405px" /></p>
<p>then count the diagonal line; because it means sequential.</p>
<p><img alt="" src="/ckfinder/userfiles/images/2d%20array.JPG" style="height:409px; width:409px" /></p>
<p>This array means there is the longest length of duplicated contig is 12 nucleotides and 5 is one, 4 is one and 3 is 12 then etc.</p>
<p>So I can calculate the similarity by this result</p>
<p> </p>
