Difference between revisions of "Protein structure"

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imported>Chaeshinhyeok
imported>Chaeshinhyeok
 
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 +
<p>&nbsp;</p>
 +
 +
<p>helix, sheet &gt;&gt; structure, maintaining</p>
 +
 +
<p>coil &gt;&gt; bind, attacking</p>
 +
 
<p>1. CCNL1</p>
 
<p>1. CCNL1</p>
  
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STQTALA</p>
 
STQTALA</p>
  
−
<p>*&nbsp;</p>
+
<p>*structure</p>
 +
 
 +
<p>&nbsp;<img src="https://outlook.office.com/owa/service.svc/s/GetAttachmentThumbnail?id=AAMkADVjYWQ2NjQxLTQyODctNDdjZS05MmM0LTNjMzk3ODc3MTM0OQBGAAAAAAA3I84uOQdFT6OnWDrX5hxBBwAqh0Ua3X%2BoRZ%2BziOiYf7A0AAAAAAEMAACiUvzcfDkTSbk8wy3WjXoGAABGKY1nAAABEgAQAFrY%2FK6W8oBOrlvXDdky%2FJ8%3D&amp;thumbnailType=2&amp;X-OWA-CANARY=HoIQsoAfdE2XXR2KqNFVE7Agxq5GjdMY8a-5UNiPZQQwyAYdhF-whYfdtR1nrOmBuOQ-3JhyDok." /></p>
 +
 
 +
<p><img src="http://zhanglab.ccmb.med.umich.edu/I-TASSER/output/S277260/BFP.png" /></p>
  
 
<p>3.&nbsp;NAD [Oligotropha carboxidovorans OM5]</p>
 
<p>3.&nbsp;NAD [Oligotropha carboxidovorans OM5]</p>
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<p>* sequence</p>
 
<p>* sequence</p>
  
−
<p>&nbsp; &nbsp; &nbsp; &nbsp; 1 mdklpthmtv iaisqpggpd vlvpeqrevp kpaageilvk veaagvnrpd vlqrmgkypv<br />
+
<p>MDKLPTHMTVIAISQPGGPDVLVPEQREVPKPAAGEILVKVEAAGVNRPDVLQRMGKYPV<br />
−
&nbsp; &nbsp; &nbsp; &nbsp;61 ppgasdlpgl eiagtvvalg egarkhkigd kvmsltaggg yaeycvapda haitipagls<br />
+
PPGASDLPGLEIAGTVVALGEGARKHKIGDKVMSLTAGGGYAEYCVAPDAHAITIPAGLS<br />
−
&nbsp; &nbsp; &nbsp; 121 mkeaatlpet vmtvwhnvfe rcalkpgetf mvhggssgig ttaiqmakah gakvivtvgs<br />
+
MKEAATLPETVMTVWHNVFERCALKPGETFMVHGGSSGIGTTAIQMAKAHGAKVIVTVGS<br />
−
&nbsp; &nbsp; &nbsp; 181 qekadacvtl gadvavnykt qdfvaeakaa tggkgvnvil dmvggeyvdr nydacategr<br />
+
QEKADACVTLGADVAVNYKTQDFVAEAKAATGGKGVNVILDMVGGEYVDRNYDACATEGR<br />
−
&nbsp; &nbsp; &nbsp; 241 ivqiaflggp katanfgklm mkrlwhtgst lrprsnedka amvkaieatv lpwivagrlk<br />
+
IVQIAFLGGPKATANFGKLMMKRLWHTGSTLRPRSNEDKAAMVKAIEATVLPWIVAGRLK<br />
−
&nbsp; &nbsp; &nbsp; 301 plidsefslk daakaharme sgqhigkivl tv</p>
+
PLIDSEFSLKDAAKAHARMESGQHIGKIVLTV</p>
  
−
<p>*</p>
+
<p>*structure</p>
 +
 
 +
<p><img src="https://outlook.office.com/owa/service.svc/s/GetAttachmentThumbnail?id=AAMkADVjYWQ2NjQxLTQyODctNDdjZS05MmM0LTNjMzk3ODc3MTM0OQBGAAAAAAA3I84uOQdFT6OnWDrX5hxBBwAqh0Ua3X%2BoRZ%2BziOiYf7A0AAAAAAEMAACiUvzcfDkTSbk8wy3WjXoGAABGKY15AAABEgAQAARERnH7HghCjpICLAX1B6I%3D&amp;thumbnailType=2&amp;X-OWA-CANARY=1p8vMZJ7IEeTfNOb1ER7SSAX3YvIj9MYaFX0me6Zx-ayycy0ePldxp0epCR8DlVYEInRd-X-1Fw." /></p>
 +
 
 +
<p><img src="http://zhanglab.ccmb.med.umich.edu/I-TASSER/output/S277574/BFP.png" /></p>
  
 
<p>4.&nbsp;myoglobin&nbsp;[Homo sapiens]</p>
 
<p>4.&nbsp;myoglobin&nbsp;[Homo sapiens]</p>
Line 53: Line 67:
 
<p>* sequence</p>
 
<p>* sequence</p>
  
−
<pre>
+
<p>MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE<br />
−
        1 mglsdgewql vlnvwgkvea dipghgqevl irlfkghpet lekfdkfkhl ksedemkase
+
DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH<br />
−
      61 dlkkhgatvl talggilkkk ghheaeikpl aqshatkhki pvkylefise ciiqvlqskh
+
PGDFGADAQGAMNKALELFRKDMASNYKELGFQG</p>
−
      121 pgdfgadaqg amnkalelfr kdmasnykel gfqg</pre>
 
  
−
<p>*</p>
+
<p>*structure</p>
 +
 
 +
<p><img src="https://outlook.office.com/owa/service.svc/s/GetAttachmentThumbnail?id=AAMkADVjYWQ2NjQxLTQyODctNDdjZS05MmM0LTNjMzk3ODc3MTM0OQBGAAAAAAA3I84uOQdFT6OnWDrX5hxBBwAqh0Ua3X%2BoRZ%2BziOiYf7A0AAAAAAEMAACiUvzcfDkTSbk8wy3WjXoGAABHdwLyAAABEgAQAKD5dEV4XRhDkasSeVbqCtM%3D&amp;thumbnailType=2&amp;X-OWA-CANARY=73URokf1Fk2tAi_dGd9Y0jDuGmjZkNMYUjbAQmbdtmivAMgemxK0COq_xc4AtQm8YLSNpLMG4X0." /></p>
 +
 
 +
<p><img src="http://zhanglab.ccmb.med.umich.edu/I-TASSER/output/S278089/BFP.png" /></p>
  
 
<p>5.&nbsp;keratin&nbsp;[Pseudomonas aeruginosa]</p>
 
<p>5.&nbsp;keratin&nbsp;[Pseudomonas aeruginosa]</p>
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<p>*sequence</p>
 
<p>*sequence</p>
  
−
<pre>
+
<p>MVGQDVMRCLMALGLVLQGLSFGAQAAPGGAVELYRYVNDKGVVVLDRQGVPPQYIGKGY<br />
−
        1 mvgqdvmrcl malglvlqgl sfgaqaapgg avelyryvnd kgvvvldrqg vppqyigkgy
+
QVLNDQGRVIRTVPPAPTAEELRQRKAAQAQASSDAQLLRLYSSLEDVDRARERRLAELD<br />
−
      61 qvlndqgrvi rtvppaptae elrqrkaaqa qassdaqllr lyssledvdr arerrlaeld
+
GLSSVARGNLQSLKLQQANLQGQAANQERAGRPVAQALVDQLDDLKQEEKRLQGEIGRFQ<br />
−
      121 glssvargnl qslklqqanl qgqaanqera grpvaqalvd qlddlkqeek rlqgeigrfq
+
KAREDAERTYAADRARLSQLLGVSP</p>
−
      181 karedaerty aadrarlsql lgvsp</pre>
+
 
 +
<p>*structure</p>
 +
 
 +
<p><img src="https://outlook.office.com/owa/service.svc/s/GetAttachmentThumbnail?id=AAMkADVjYWQ2NjQxLTQyODctNDdjZS05MmM0LTNjMzk3ODc3MTM0OQBGAAAAAAA3I84uOQdFT6OnWDrX5hxBBwAqh0Ua3X%2BoRZ%2BziOiYf7A0AAAAAAEMAACiUvzcfDkTSbk8wy3WjXoGAABJauBDAAABEgAQAM3wuhUzdqdMm2okJbTvC4g%3D&amp;thumbnailType=2&amp;X-OWA-CANARY=zNZnPb6Op06HQlwZ7KsU2dAYQYP3kdMYVuM1_JJSiNn5-W0PvRAlpV1Sr5KqdHjmBxG-O9eeTEc." /></p>
  
−
<p>*</p>
+
<p><img src="http://zhanglab.ccmb.med.umich.edu/I-TASSER/output/S278265/BFP.png" /></p>

Latest revision as of 21:58, 11 June 2016

 

helix, sheet >> structure, maintaining

coil >> bind, attacking

1. CCNL1

* sequence : 
MSAAVFSRAKMAAGPLSVSSNASTNNDGILIGDKVYSEVYLTIDNSLIPEERLSPTPSML
DGLDLNTETDLRILGCELIQSAGILLRLPQVAMATAQVLFHRFFYSKSFVKHSFEIVAMA
CINLASKIEEAPRRIRDVVNVFHHLRQIRCKKTPSSLILDQNYINTKNQVIKAERRILKE
LGFCVHVKHPHKIIVMYLQVLECEKNQTLVQTAWNYMNDSLRTNVFVRFQAETIACACIF
LAARALQIPLPSKPHWYLLFGASEDEIKDICITTLKLYTRKKPNYDHLEKEVERRKMFLA
EAKLKAKGLNPDGTPALSTLGGFSPASKPCSPSVVKVEEKSPNPQTLKPVKKEPDNRAQV
NKSPHNGLRKEVKIGRNSRSGSRSCSRTRSRSRSRSPRRHYNSRRSCSGTYSSRSRSRSH
SRSPSPRRHPPSPLLPHLKSKTSHHSNSDSKPSGRHSNSGGSGHKRKRSRSRSRSRTPVK
VDRERDRERERERDRERSSFDLSSKKHKHERGGHRGDRRERERSRSYDRERERERSHKSK
HHSSSGHSGHGRHRR

*structure

2. bovine serum albumin [Bos taurus]

* sequence

MKWVTFISLLLLFSSAYSRGVFRRDTHKSEIAHRFKDLGEEHFKGLVLIAFSQYLQQCPF
DEHVKLVNELTEFAKTCVADESHAGCEKSLHTLFGDELCKVASLRETYGDMADCCEKQEP
ERNECFLSHKDDSPDLPKLKPDPNTLCDEFKADEKKFWGKYLYEIARRHPYFYAPELLYY
ANKYNGVFQECCQAEDKGACLLPKIETMREKVLTSSARQRLRCASIQKFGERALKAWSVA
RLSQKFPKAEFVEVTKLVTDLTKVHKECCHGDLLECADDRADLAKYICDNQDTISSKLKE
CCDKPLLEKSHCIAEVEKDAIPENLPPLTADFAEDKDVCKNYQEAKDAFLGSFLYEYSRR
HPEYAVSVLLRLAKEYEATLEECCAKDDPHACYSTVFDKLKHLVDEPQNLIKQNCDQFEK
LGEYGFQNALIVRYTRKVPQVSTPTLVEVSRSLGKVGTRCCTKPESERMPCTEDYLSLIL
NRLCVLHEKTPVSEKVTKCCTESLVNRRPCFSALTPDETYVPKAFDEKLFTFHADICTLP
DTEKQIKKQTALVELLKHKPKATEEQLKTVMENFVAFVDKCCAADDKEACFAVEGPKLVV
STQTALA

*structure

 

3. NAD [Oligotropha carboxidovorans OM5]

* sequence

MDKLPTHMTVIAISQPGGPDVLVPEQREVPKPAAGEILVKVEAAGVNRPDVLQRMGKYPV
PPGASDLPGLEIAGTVVALGEGARKHKIGDKVMSLTAGGGYAEYCVAPDAHAITIPAGLS
MKEAATLPETVMTVWHNVFERCALKPGETFMVHGGSSGIGTTAIQMAKAHGAKVIVTVGS
QEKADACVTLGADVAVNYKTQDFVAEAKAATGGKGVNVILDMVGGEYVDRNYDACATEGR
IVQIAFLGGPKATANFGKLMMKRLWHTGSTLRPRSNEDKAAMVKAIEATVLPWIVAGRLK
PLIDSEFSLKDAAKAHARMESGQHIGKIVLTV

*structure

4. myoglobin [Homo sapiens]

* sequence

MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
PGDFGADAQGAMNKALELFRKDMASNYKELGFQG

*structure

5. keratin [Pseudomonas aeruginosa]

*sequence

MVGQDVMRCLMALGLVLQGLSFGAQAAPGGAVELYRYVNDKGVVVLDRQGVPPQYIGKGY
QVLNDQGRVIRTVPPAPTAEELRQRKAAQAQASSDAQLLRLYSSLEDVDRARERRLAELD
GLSSVARGNLQSLKLQQANLQGQAANQERAGRPVAQALVDQLDDLKQEEKRLQGEIGRFQ
KAREDAERTYAADRARLSQLLGVSP

*structure

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