imported>J |
imported>Yeong Jae Kim |
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| − | <span style="WIDOWS: 2; TEXT-TRANSFORM: none; TEXT-INDENT: 0px; BORDER-COLLAPSE: separate; FONT: 16px 'Times New Roman'; WHITE-SPACE: normal; ORPHANS: 2; LETTER-SPACING: normal; COLOR: rgb(0,0,0); WORD-SPACING: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px" class="Apple-style-span"><span style="LINE-HEIGHT: 14px; FONT-FAMILY: Verdana; FONT-SIZE: 12px" class="Apple-style-span"><br /> | + | <h1><span style="font-size:12px">1. ATAD5 ATPase family, AAA domain containing 5 [ <em>Homo sapiens</em> (human) ]</span></h1> |
| − | <span style="WIDOWS: 2; TEXT-TRANSFORM: none; TEXT-INDENT: 0px; BORDER-COLLAPSE: separate; FONT: 16px 'Times New Roman'; WHITE-SPACE: normal; ORPHANS: 2; LETTER-SPACING: normal; COLOR: rgb(0,0,0); WORD-SPACING: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px" class="Apple-style-span"><span style="TEXT-ALIGN: right; FONT-FAMILY: Verdana; FONT-SIZE: 12px" class="Apple-style-span"><span style="VERTICAL-ALIGN: top" title="PLoS pathogens."><a style="VERTICAL-ALIGN: top" href="javascript:AL_get(this, 'jour', 'PLoS Pathog.');"><font color="#0066cc">PLoS Pathog.</font></a></span><span class="Apple-converted-space"> </span>2009 May;5(5):e1000446. Epub 2009 May 29<br />
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| − | </span></span><span style="WIDOWS: 2; TEXT-TRANSFORM: none; TEXT-INDENT: 0px; BORDER-COLLAPSE: separate; FONT: 16px 'Times New Roman'; WHITE-SPACE: normal; ORPHANS: 2; LETTER-SPACING: normal; COLOR: rgb(0,0,0); WORD-SPACING: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px" class="Apple-style-span"><span style="FONT-FAMILY: Verdana; FONT-SIZE: 14px" class="Apple-style-span"> | + | <p><span style="font-size:12px">Gene ID: 79915, updated on 26-May-2016</span></p> |
| − | <div style="PADDING-BOTTOM: 0px; MARGIN: 0px 0px 0.5em 0.5em; PADDING-LEFT: 0px; PADDING-RIGHT: 0px; FONT-SIZE: 12px; PADDING-TOP: 0px" class="authors"><a style="FONT-WEIGHT: bold" href="http://genomics.org/sites/entrez?Db=pubmed&Cmd=Search&Term=%22Ollomo%20B%22%5BAuthor%5D&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DiscoveryPanel.Pubmed_RVAbstractPlus"><strong><font color="#0066cc">Ollomo B</font></strong></a>,<span class="Apple-converted-space"> </span><a style="FONT-WEIGHT: bold" href="http://genomics.org/sites/entrez?Db=pubmed&Cmd=Search&Term=%22Durand%20P%22%5BAuthor%5D&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DiscoveryPanel.Pubmed_RVAbstractPlus"><strong><font color="#0066cc">Durand P</font></strong></a>,<span class="Apple-converted-space"> </span><a style="FONT-WEIGHT: bold" href="http://genomics.org/sites/entrez?Db=pubmed&Cmd=Search&Term=%22Prugnolle%20F%22%5BAuthor%5D&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DiscoveryPanel.Pubmed_RVAbstractPlus"><strong><font color="#0066cc">Prugnolle F</font></strong></a>,<span class="Apple-converted-space"> </span><a style="FONT-WEIGHT: bold" href="http://genomics.org/sites/entrez?Db=pubmed&Cmd=Search&Term=%22Douzery%20E%22%5BAuthor%5D&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DiscoveryPanel.Pubmed_RVAbstractPlus"><strong><font color="#0066cc">Douzery E</font></strong></a>,<span class="Apple-converted-space"> </span><a style="FONT-WEIGHT: bold" href="http://genomics.org/sites/entrez?Db=pubmed&Cmd=Search&Term=%22Arnathau%20C%22%5BAuthor%5D&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DiscoveryPanel.Pubmed_RVAbstractPlus"><strong><font color="#0066cc">Arnathau C</font></strong></a>,<span class="Apple-converted-space"> </span><a style="FONT-WEIGHT: bold" href="http://genomics.org/sites/entrez?Db=pubmed&Cmd=Search&Term=%22Nkoghe%20D%22%5BAuthor%5D&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DiscoveryPanel.Pubmed_RVAbstractPlus"><strong><font color="#0066cc">Nkoghe D</font></strong></a>,<span class="Apple-converted-space"> </span><a style="FONT-WEIGHT: bold" href="http://genomics.org/sites/entrez?Db=pubmed&Cmd=Search&Term=%22Leroy%20E%22%5BAuthor%5D&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DiscoveryPanel.Pubmed_RVAbstractPlus"><strong><font color="#0066cc">Leroy E</font></strong></a>,<span class="Apple-converted-space"> </span><a style="FONT-WEIGHT: bold" href="http://genomics.org/sites/entrez?Db=pubmed&Cmd=Search&Term=%22Renaud%20F%22%5BAuthor%5D&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DiscoveryPanel.Pubmed_RVAbstractPlus"><strong><font color="#0066cc">Renaud F</font></strong></a>.</div> | + | |
| − | <p style="LINE-HEIGHT: 1.2em; MARGIN: 1em 0px 0.5em 0.5em; FONT-SIZE: 11px; PADDING-TOP: 0px" class="affiliation">Unité des Maladies Virales Emergentes, Centre International de Recherches Médicales de Franceville, Franceville, Gabon.</p> | + | <p><span style="font-size:12px"><i want to understand about PCNA and ATAD5 role. so pick that></span></p> |
| − | </span></span><br />
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| − | <br />
| + | <p><span style="font-size:12px">source comes from. http://www.ncbi.nlm.nih.gov/protein/26080431?report=fasta</span></p> |
| − | Researchers reported the discovery of a new Plasmodium species infecting Hominids. <br />
| + | |
| − | New species has been isolated in two chimpanzees (Pan troglodytes) kept as pets by villagers in Gabon (Africa). <br />
| + | <h1>ATPase family AAA domain-containing protein 5 [Homo sapiens]</h1> |
| − | <br />
| + | |
| − | Analysis of its complete mitochondrial genome (5529 nucleotides including Cyt b, Cox I and Cox III genes) reveals an older divergence of this lineage from the clade that includes [[P. falciparum]] and [[P. reichenowi]] (approximately 21+/-9 Myrs ago using Bayesian methods and considering that the divergence between P. falciparum and P. reichenowi occurred 4 to 7 million years ago as generally considered in the literature). <br />
| + | <p>NCBI Reference Sequence: NP_079133.3</p> |
| − | This time frame would be congruent with the radiation of hominoids, suggesting that this Plasmodium lineage might have been present in early hominoids and that they may both have experienced a simultaneous diversification.<br />
| + | |
| − | <br />
| + | <pre> |
| − | <a href="http://www.ncbi.nlm.nih.gov/pubmed/19478877?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum"><font color="#0066cc">http://www.ncbi.nlm.nih.gov/pubmed/19478877?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum</font></a><br /> | + | >gi|26080431|ref|NP_079133.3| ATPase family AAA domain-containing protein 5 [Homo sapiens] |
| − | </span></span>
| + | MVGVLAMAAAAAPPPVKDCEIEPCKKRKKDDDTSTCKTITKYLSPLGKTRDRVFAPPKPSNILDYFRKTS |
| | + | PTNEKTQLGKECKIKSPESVPVDSNKDCTTPLEMFSNVEFKKKRKRVNLSHQLNNIKTENEAPIEISSDD |
| | + | SKEDYSLNNDFVESSTSVLRYKKQVEVLAENIQDTKSQPNTMTSLQNSKKVNPKQGTTKNDFKKLRKRKC |
| | + | RDVVDLSESLPLAEELNLLKKDGKDTKQMENTTSHANSRDNVTEAAQLNDSIITVSYEEFLKSHKENKVE |
| | + | EIPDSTMSICVPSETVDEIVKSGYISESENSEISQQVRFKTVTVLAQVHPIPPKKTGKIPRIFLKQKQFE |
| | + | MENSLSDPENEQTVQKRKSNVVIQEEELELAVLEAGSSEAVKPKCTLEERQQFMKAFRQPASDALKNGVK |
| | + | KSSDKQKDLNEKCLYEVGRDDNSKKIMENSGIQMVSKNGNLQLHTDKGSFLKEKNKKLKKKNKKTLDTGA |
| | + | IPGKNREGNTQKKETTFFLKEKQYQNRMSLRQRKTEFFKSSTLFNNESLVYEDIANDDLLKVSSLCNNNK |
| | + | LSRKTSIPVKDIKLTQSKAESEASLLNVSTPKSTRRSGRISSTPTTETIRGIDSDDVQDNSQLKASTQKA |
| | + | ANLSEKHSLYTAELITVPFDSESPIRMKFTRISTPKKSKKKSNKRSEKSEATDGGFTSQIRKASNTSKNI |
| | + | SKAKQLIEKAKALHISRSKVTEEIAIPLRRSSRHQTLPERKKLSETEDSVIIIDSSPTALKHPEKNQKKL |
| | + | QCLNDVLGKKLNTSTKNVPGKMKVAPLFLVRKAQKAADPVPSFDESSQDTSEKSQDCDVQCKAKRDFLMS |
| | + | GLPDLLKRQIAKKAAALDVYNAVSTSFQRVVHVQQKDDGCCLWHLKPPSCPLLTKFKELNTKVIDLSKCG |
| | + | IALGEFSTLNSKLKSGNSAAVFMRTRKEFTEEVRNLLLEEIRWSNPEFSLKKYFPLLLKKQIEHQVLSSE |
| | + | CHSKQELEADVSHKETKRKLVEAENSKSKRKKPNEYSKNLEKTNRKSEELSKRNNSSGIKLDSSKDSGTE |
| | + | DMLWTEKYQPQTASELIGNELAIKKLHSWLKDWKRRAELEERQNLKGKRDEKHEDFSGGIDFKGSSDDEE |
| | + | ESRLCNTVLITGPTGVGKTAAVYACAQELGFKIFEVNASSQRSGRQILSQLKEATQSHQVDKQGVNSQKP |
| | + | CFFNSYYIGKSPKKISSPKKVVTSPRKVPPPSPKSSGPKRALPPKTLANYFKVSPKPKNNEEIGMLLENN |
| | + | KGIKNSFEQKQITQTKSTNATNSNVKDVGAEEPSRKNATSLILFEEVDVIFDEDAGFLNAIKTFMATTKR |
| | + | PVILTTSDPTFSLMFDGCFEEIKFSTPSLLNVASYLQMICLTENFRTDVKDFVTLLTANTCDIRKSILYL |
| | + | QFWIRSGGGVLEERPLTLYRGNSRNVQLVCSEHGLDNKIYPKNTKKKRVDLPKCDSGCAETLFGLKNIFS |
| | + | PSEDLFSFLKHKITMKEEWHKFIQLLTEFQMRNVDFLYSNLEFILPLPVDTIPETKNFCGPSVTVDASAA |
| | + | TKSMNCLARKHSEREQPLKKSQKKKQKKTLVILDDSDLFDTDLDFPDQSISLSSVSSSSNAEESKTGDEE |
| | + | SKARDKGNNPETKKSIPCPPKTTAGKKCSALVSHCLNSLSEFMDNMSFLDALLTDVREQNKYGRNDFSWT |
| | + | NGKVTSGLCDEFSLESNDGWTSQSSGELKAAAEALSFTKCSSAISKALETLNSCKKLGRDPTNDLTFYVS |
| | + | QKRNNVYFSQSAANLDNAWKRISVIKSVFSSRSLLYVGNRQASIIEYLPTLRNICKTEKLKEQGKSKRRF |
| | + | LHYFEGIHLDIPKETVNTLAADFP</pre> |
| | + | |
| | + | <p> </p> |
| | + | |
| | + | <p> </p> |
| | + | |
| | + | <p>result : http://zhanglab.ccmb.med.umich.edu/I-TASSER/output/S274747/</p> |
| | + | |
| | + | <p> http://zhanglab.ccmb.med.umich.edu/I-TASSER/output/S274747/</p> |
| | + | |
| | + | <p>& nbsp; <a href="http:// zhanglab. ccmb. med. umich. edu/I-TASSER/output/ S274747/ S274747_results. tar. bz2">http:// zhanglab. ccmb. med. umich. edu/I-TASSER/output/ S274747/ S274747_results. tar. bz2</a></ p> |
1. ATAD5 ATPase family, AAA domain containing 5 [ Homo sapiens (human) ]
Gene ID: 79915, updated on 26-May-2016
<i want to understand about PCNA and ATAD5 role. so pick that>
source comes from. http://www.ncbi.nlm.nih.gov/protein/26080431?report=fasta
ATPase family AAA domain-containing protein 5 [Homo sapiens]
NCBI Reference Sequence: NP_079133.3
>gi|26080431|ref|NP_079133.3| ATPase family AAA domain-containing protein 5 [Homo sapiens]
MVGVLAMAAAAAPPPVKDCEIEPCKKRKKDDDTSTCKTITKYLSPLGKTRDRVFAPPKPSNILDYFRKTS
PTNEKTQLGKECKIKSPESVPVDSNKDCTTPLEMFSNVEFKKKRKRVNLSHQLNNIKTENEAPIEISSDD
SKEDYSLNNDFVESSTSVLRYKKQVEVLAENIQDTKSQPNTMTSLQNSKKVNPKQGTTKNDFKKLRKRKC
RDVVDLSESLPLAEELNLLKKDGKDTKQMENTTSHANSRDNVTEAAQLNDSIITVSYEEFLKSHKENKVE
EIPDSTMSICVPSETVDEIVKSGYISESENSEISQQVRFKTVTVLAQVHPIPPKKTGKIPRIFLKQKQFE
MENSLSDPENEQTVQKRKSNVVIQEEELELAVLEAGSSEAVKPKCTLEERQQFMKAFRQPASDALKNGVK
KSSDKQKDLNEKCLYEVGRDDNSKKIMENSGIQMVSKNGNLQLHTDKGSFLKEKNKKLKKKNKKTLDTGA
IPGKNREGNTQKKETTFFLKEKQYQNRMSLRQRKTEFFKSSTLFNNESLVYEDIANDDLLKVSSLCNNNK
LSRKTSIPVKDIKLTQSKAESEASLLNVSTPKSTRRSGRISSTPTTETIRGIDSDDVQDNSQLKASTQKA
ANLSEKHSLYTAELITVPFDSESPIRMKFTRISTPKKSKKKSNKRSEKSEATDGGFTSQIRKASNTSKNI
SKAKQLIEKAKALHISRSKVTEEIAIPLRRSSRHQTLPERKKLSETEDSVIIIDSSPTALKHPEKNQKKL
QCLNDVLGKKLNTSTKNVPGKMKVAPLFLVRKAQKAADPVPSFDESSQDTSEKSQDCDVQCKAKRDFLMS
GLPDLLKRQIAKKAAALDVYNAVSTSFQRVVHVQQKDDGCCLWHLKPPSCPLLTKFKELNTKVIDLSKCG
IALGEFSTLNSKLKSGNSAAVFMRTRKEFTEEVRNLLLEEIRWSNPEFSLKKYFPLLLKKQIEHQVLSSE
CHSKQELEADVSHKETKRKLVEAENSKSKRKKPNEYSKNLEKTNRKSEELSKRNNSSGIKLDSSKDSGTE
DMLWTEKYQPQTASELIGNELAIKKLHSWLKDWKRRAELEERQNLKGKRDEKHEDFSGGIDFKGSSDDEE
ESRLCNTVLITGPTGVGKTAAVYACAQELGFKIFEVNASSQRSGRQILSQLKEATQSHQVDKQGVNSQKP
CFFNSYYIGKSPKKISSPKKVVTSPRKVPPPSPKSSGPKRALPPKTLANYFKVSPKPKNNEEIGMLLENN
KGIKNSFEQKQITQTKSTNATNSNVKDVGAEEPSRKNATSLILFEEVDVIFDEDAGFLNAIKTFMATTKR
PVILTTSDPTFSLMFDGCFEEIKFSTPSLLNVASYLQMICLTENFRTDVKDFVTLLTANTCDIRKSILYL
QFWIRSGGGVLEERPLTLYRGNSRNVQLVCSEHGLDNKIYPKNTKKKRVDLPKCDSGCAETLFGLKNIFS
PSEDLFSFLKHKITMKEEWHKFIQLLTEFQMRNVDFLYSNLEFILPLPVDTIPETKNFCGPSVTVDASAA
TKSMNCLARKHSEREQPLKKSQKKKQKKTLVILDDSDLFDTDLDFPDQSISLSSVSSSSNAEESKTGDEE
SKARDKGNNPETKKSIPCPPKTTAGKKCSALVSHCLNSLSEFMDNMSFLDALLTDVREQNKYGRNDFSWT
NGKVTSGLCDEFSLESNDGWTSQSSGELKAAAEALSFTKCSSAISKALETLNSCKKLGRDPTNDLTFYVS
QKRNNVYFSQSAANLDNAWKRISVIKSVFSSRSLLYVGNRQASIIEYLPTLRNICKTEKLKEQGKSKRRF
LHYFEGIHLDIPKETVNTLAADFP
result : http://zhanglab.ccmb.med.umich.edu/I-TASSER/output/S274747/
http://zhanglab.ccmb.med.umich.edu/I-TASSER/output/S274747/
http://zhanglab.ccmb.med.umich.edu/I-TASSER/output/S274747/S274747_results.tar.bz2
