Difference between revisions of "Jong Bhak's Genomics Syllabus"

Revision as of 01:31, 1 March 2021

Jong Bhak's Genomics course syllabus. 2021

(No mid-term exam)

* This syllabus can be changed any time in any year!

Weekly Schedule

Week	Contents: Students are required to click on all the links and listen to the Youtube channels.
01	Introduction to Jong Bhak's genomics course What is science? What is life? What is DNA? What is RNA? What is transcription and translation? What is information?
02	What is Sequencing in Genomics and Omics? How we produce genomic big data? Sanger sequencing What is a protein?
03	Next generation sequencing. Illumina sequencing Nanoball sequencing Nanopore sequencing.
04	Epigenomics Methylation sequencing (Epigenomic sequencing).
05	DNA and sequence alignment. Dynamic programming Computers for genomics (Bioinformatics). Turing machine
06	Genome Assembly. (building genomes)
07	Phylogenetic tree (tree of life): The origin of Korean people using genome data.
08	Comparative Genomics (how we can compare life using genomes)
09	Evolution (genome perspective): Is Darwinian evolution correct?
10	The human genome project
11	Korean genome project: Who are Koreans?
12	Whale genome analyses
13	Tiger genome analyses
14	Cancer genomes and Genomes and aging (telomere)
15	Research Report presentation

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 | style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">02</span></span></span></span></span></span></span>
-| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">[[What is Sequencing in Genomics and Omics?]]&nbsp;<br/> [[How we produce genomic big data?]]<br/> [[Sanger sequencing]]</span></span></span></span></span></span><br/> <span style="font-size:12pt"><span style="background:white"><span style="line-height:18.0pt"><span style="font-family:Gulim,sans-serif"><span style="font-family:"><span style="color:black">[[What_is_a_protein?|What is a protein?]]&nbsp;&nbsp;</span></span></span></span></span></span>
+| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">[[What_is_Sequencing_in_Genomics_and_Omics?|What is Sequencing in Genomics and Omics?]]&nbsp;<br/> [[How_we_produce_genomic_big_data?|How we produce genomic big data?]]<br/> [[Sanger_sequencing|Sanger sequencing]]</span></span></span></span></span></span><br/> <span style="font-size:12pt"><span style="background:white"><span style="line-height:18.0pt"><span style="font-family:Gulim,sans-serif"><span style="font-family:"><span style="color:black">[[What_is_a_protein?|What is a protein?]]&nbsp;&nbsp;</span></span></span></span></span></span>
 |-
 | style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">03</span></span></span></span></span></span></span>
-| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">[[Next generation sequencing]].<br/> [[Illumina sequencing]]<br/> [[Nanoball sequencing]]<br/> [[Nanopore sequencing]].</span></span></span></span></span></span>
+| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">[[Next_generation_sequencing|Next generation sequencing]].<br/> [[Illumina_sequencing|Illumina sequencing]]<br/> [[Nanoball_sequencing|Nanoball sequencing]]<br/> [[Nanopore_sequencing|Nanopore sequencing]].</span></span></span></span></span></span>
 |-
 | style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">04</span></span></span></span></span></span></span>
-| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">[[Epigenomics]]<br/> [[Methylation sequencing]] (Epigenomic sequencing).</span></span></span></span></span>
+| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">[[Epigenomics|Epigenomics]]<br/> [[Methylation_sequencing|Methylation sequencing]] (Epigenomic sequencing).</span></span></span></span></span>
 |-
 | style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">05</span></span></span></span></span></span></span>
-| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">[[DNA and sequence alignment]].<br/> [[Dynamic programming]]<br/> [[Computers for genomics]] ([[Bioinformatics]]).<br/> [[Turing machine]]</span></span></span></span></span></span>
+| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">[[DNA_and_sequence_alignment|DNA and sequence alignment]].<br/> [[Dynamic_programming|Dynamic programming]]<br/> [[Computers_for_genomics|Computers for genomics]] ([[Bioinformatics|Bioinformatics]]).<br/> [[Turing_machine|Turing machine]]</span></span></span></span></span></span>
 |-
 | style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">06</span></span></span></span></span></span></span>
-| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">[[Genome Assembly]]. (building genomes)</span></span></span></span></span>
+| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">[[Genome_Assembly|Genome Assembly]]. (building genomes)</span></span></span></span></span>
 |-
 | style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">07</span></span></span></span></span></span></span>
-| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">[[Phylogenetic tree]] (tree of life): The origin of Korean people using genome data.</span></span></span></span></span></span>
+| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">[[Phylogenetic_tree|Phylogenetic tree]] (tree of life): The origin of Korean people using genome data.</span></span></span></span></span></span>
 |-
 | style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">08</span></span></span></span></span></span></span>
-| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">[[Comparative Genomics]] (how we can compare life using genomes)</span></span></span></span></span></span>
+| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">[[Comparative_Genomics|Comparative Genomics]] (how we can compare life using genomes)</span></span></span></span></span></span>
 |-
 | style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">09</span></span></span></span></span></span></span>
-| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">[[Evolution]] (genome perspective): Is Darwinian evolution correct?</span></span></span></span></span></span>
+| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">[[Evolution|Evolution]] (genome perspective): Is Darwinian evolution correct?</span></span></span></span></span></span>
 |-
 | style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">10</span></span></span></span></span></span></span>
-| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">&nbsp;[[The human genome project]]</span></span></span></span></span>
+| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">&nbsp;[[The_human_genome_project|The human genome project]]</span></span></span></span></span>
 |-
 | style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">11</span></span></span></span></span></span></span>
-| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:">&nbsp;[[<span style="font-size:12.0pt"><span style="font-family:">The Korean genome project]]: Who are Koreans?</span></span></span></span></span>
+| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:">&nbsp;<span style="font-size:12.0pt"><span style="font-family:">[[Korean genome project]]: Who are Koreans?</span></span></span></span></span>
 |-
 | style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">12</span></span></span></span></span></span></span>
-| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">[[Whale genome analyses]]</span></span></span></span></span></span>
+| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">[[Whale_genome_analyses|Whale genome analyses]]</span></span></span></span></span></span>
 |-
 | style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">13</span></span></span></span></span></span></span>
-| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">&nbsp;[[Tiger genome analyses]]</span></span></span></span></span></span>
+| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">&nbsp;[[Tiger_genome_analyses|Tiger genome analyses]]</span></span></span></span></span></span>
 |-
 | style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">14</span></span></span></span></span></span></span>
-| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">[[Cancer genomes]] and [[Genomes and aging]] (telomere)</span></span></span></span></span></span></span>
+| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">[[Cancer_genomes|Cancer genomes]] and [[Genomes_and_aging|Genomes and aging]] (telomere)</span></span></span></span></span></span></span>
 |-
 | style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">15</span></span></span></span></span></span></span>

Difference between revisions of "Jong Bhak's Genomics Syllabus"

Revision as of 01:31, 1 March 2021

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