Difference between revisions of "Jong Bhak's Genomics Syllabus"

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<div style="word-break: keep-all; margin: 0cm 0cm 8pt; line-height: 160%"><span style="font-size:24px">'''<span style="color:black">Jong Bhak's Genomics course syllabus. 2024 (Spring)</span>'''</span></div> <div style="word-break: keep-all; margin: 0cm 0cm 8pt; line-height: 160%"><span style="font-size:16px;">'''<span style="color:black">(No mid-term exam)</span>'''</span></div> <div style="word-break: keep-all; margin: 0cm 0cm 8pt; line-height: 160%">'''<span style="font-size:10pt"><span style="line-height:160%"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="line-height:160%"><span style="font-family:"><span style="color:black">Weekly Schedule</span></span></span></span></span></span></span></span></span>'''</div> <div style="word-break: keep-all; margin: 0cm 0cm 8pt; line-height: 160%">
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<div style="margin: 0cm 0cm 8pt; line-height: 160%; -ms-word-break: keep-all"><b><span style="font-size: 12pt; color: black; line-height: 160%">Jong Bhak's Genomics course syllabus.</span></b></div>
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<div style="margin: 0cm 0cm 8pt; line-height: 160%; -ms-word-break: keep-all"><span style="font-size: 12pt; color: black; line-height: 160%">Weekly Schedule</span></div>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:19px; background-color:#d6d6d6; border-top:1px solid black; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="line-height:160%"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="line-height:160%"><span style="font-family:"><span style="color:black">Week</span></span></span></span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:19px; background-color:#d6d6d6; border-top:1px solid black; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="line-height:160%"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="line-height:160%"><span style="font-family:"><span style="color:black">Contents: Students are required to click on all the links and listen to the Youtube channels.</span></span></span></span></span></span></span></span></span>
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            <td style="border-top: black 1pt solid; height: 14.7pt; border-right: black 1pt solid; width: 40.8pt; background: rgb(214,214,214); border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; border-image: none" width="68">
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">01</span></span></span></span></span></span></span>
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            <div style="text-align: center; margin: 0cm 0cm 8pt; line-height: 160%; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 160%"><font size="2">Week</font></span></div>
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| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:12pt"><span style="background:white"><span style="line-height:18.0pt"><span style="font-family:Gulim,sans-serif"><span style="font-family:"><span style="color:black">[[Introduction_to_Jong_Bhak's_genomics_course|Introduction to Jong Bhak's genomics course]]<br/> [[What_is_science?|What is science?]]<br/> [[What_is_life?|What is life?]]<br/> [[What_is_DNA?|What is DNA?]] [[What_is_RNA?|What is RNA?]]<br/> [[What_is_transcription_and_translation?|What is transcription and translation?]]<br/> [[What_is_information?|What is information?]]</span></span></span></span></span></span>
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            <td style="border-top: black 1pt solid; height: 14.7pt; border-right: black 1pt solid; width: 410.2pt; background: rgb(214,214,214); border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; border-image: none" width="684">
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">02</span></span></span></span></span></span></span>
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            <div style="text-align: center; margin: 0cm 0cm 8pt; line-height: 160%; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 160%"><font size="2">Contents</font></span></div>
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| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">[[What_is_Sequencing_in_Genomics_and_Omics?|What is Sequencing in Genomics and Omics?]]&nbsp;<br/> &nbsp; [https://www.youtube.com/watch?v=m4I7Fy0xxbk</span></span></span></span></span></span>History of Genome Sequencing by Ahmet Sacan]<br/> <br/> <br/> <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">[[How_we_produce_genomic_big_data?|How we produce genomic big data?]]<br/> [[Sanger_sequencing|Sanger sequencing]]</span></span></span></span></span></span><br/> <span style="font-size:12pt"><span style="background:white"><span style="line-height:18.0pt"><span style="font-family:Gulim,sans-serif"><span style="font-family:"><span style="color:black">[[What_is_a_protein?|What is a protein?]]&nbsp;&nbsp;</span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">03</span></span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">[[Next_generation_sequencing|Next generation sequencing]].<br/> [[Illumina_sequencing|Illumina sequencing]]<br/> [[Nanoball_sequencing|Nanoball sequencing]]<br/> [[Nanopore_sequencing|Nanopore sequencing]].</span></span></span></span></span></span>
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            <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">01</font></span></div>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">04</span></span></span></span></span></span></span>
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            <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">(4th Sep 2015)</font></span></div>
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| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">[[Epigenomics|Epigenomics]]<br/> [[Methylation_sequencing|Methylation sequencing]] (Epigenomic sequencing).</span></span></span></span></span>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">05</span></span></span></span></span></span></span>
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            <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left">&nbsp;</div>
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| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">[[DNA_and_sequence_alignment|DNA and sequence alignment]].<br/> [[Dynamic_programming|Dynamic programming]]<br/> [[Computers_for_genomics|Computers for genomics]] ([[Bioinformatics|Bioinformatics]]).<br/> [[Turing_machine|Turing machine]]</span></span></span></span></span></span>
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            <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;(Course orientation, [[Self-Critical Scientific Evaluation]]: SCE), Homework, Presentation, and Research</font></span></div>
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            <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;</font></span></div>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">06</span></span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">[[Genome_Assembly|Genome Assembly]]. (building genomes)</span></span></span></span></span>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">07</span></span></span></span></span></span></span>
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            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 40.8pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="68">
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| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">[[Phylogenetic_tree|Phylogenetic tree]] (tree of life): The origin of Korean people using genome data.</span></span></span></span></span></span>
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            <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">02</font></span></div>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">08</span></span></span></span></span></span></span>
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            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
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| style="border-bottom: 1px solid black; width: 700px; padding: 1px; height: 47px; border-top: none; border-right: 1px solid black; border-left: none;" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">[[Comparative_Genomics|Comparative Genomics]] (how we can compare life using genomes)<br/> &nbsp; *&nbsp;[https://www.youtube.com/watch?v=JvUtiIfddvI Intro of Comparative Genomics by Jong Bhak]</span></span></span></span></span></span>
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            <div style="text-align: left; margin: 0cm 0cm 8pt; text-indent: 5pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;&nbsp; Chemistry and Biochemistry of Genomics</font></span></div>
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            <div style="text-align: left; margin: 0cm 0cm 8pt; text-indent: 5pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp; &nbsp;[[Sequencing]], [[PCR]], </font></span></div>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">09</span></span></span></span></span></span></span>
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            <div style="text-align: left; margin: 0cm 0cm 8pt; text-indent: 5pt; -ms-word-break: keep-all" align="left">&nbsp;</div>
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| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">[[Evolution|Evolution]] (genome perspective): Is Darwinian evolution correct?</span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">10</span></span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">&nbsp;[[The_human_genome_project|The human genome project]]</span></span></span></span></span>
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            <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">03</font></span></div>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">11</span></span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:">&nbsp;<span style="font-size:12.0pt"><span style="font-family:">[[Korean_genome_project|Korean genome project]]: Who are Koreans?</span></span></span></span></span>
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            <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp; &nbsp;What is reference?</font></span></div>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">12</span></span></span></span></span></span></span>
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            <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp; [[Alignment]]</font></span></div>
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| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">[[Whale_genome_analyses|Whale genome analyses]]</span></span></span></span></span></span>
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            <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left">&nbsp;</div>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">13</span></span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">&nbsp;[[Tiger_genome_analyses|Tiger genome analyses]]</span></span></span></span></span></span>
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            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 40.8pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="68">
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">14</span></span></span></span></span></span></span>
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            <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">04</font></span></div>
+
| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">[[Cancer_genomes|Cancer genomes]] and [[Genomes_and_aging|Genomes and aging]] (telomere, Epigenomic reprogramming)</span></span></span></span></span></span></span>
−
            </td>
+
|-
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            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684">
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">15</span></span></span></span></span></span></span>
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            <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left">&nbsp;</div>
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| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">Research Report presentation ([[SELF|SELF]])</span></span></span></span></span></span></span>
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            </td>
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|}
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        </tr>
+
 
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&nbsp;
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            <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">05</font></span></div>
 
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            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684">
 
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            <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;</font><font size="2">What is Information?</font></span></div>
 
−
            <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;&nbsp;&nbsp; Informatics</font></span></div>
 
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            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 40.8pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="68">
 
−
            <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">06</font></span></div>
 
−
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−
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            <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;</font><font size="2">What is Programming?</font></span></div>
 
−
            <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;&nbsp;&nbsp; Perl, Bioperl</font></span>, Algorithm</div>
 
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            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 40.8pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="68">
 
−
            <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">07</font></span></div>
 
−
            </td>
 
−
            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684">
 
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            <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;</font><font size="2">What is Bioinformatics? </font></span></div>
 
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            <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;&nbsp;&nbsp; Principles of Bioinformatics</font></span></div>
 
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            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 40.8pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="68">
 
−
            <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">08</font></span></div>
 
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            </td>
 
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            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684">
 
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            <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;</font><font size="2">What is Omics?</font></span></div>
 
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            <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;&nbsp;&nbsp; Various omics</font></span></div>
 
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            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 40.8pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="68">
 
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            <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">09</font></span></div>
 
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            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684">
 
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            <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;</font><font size="2">What is Genomics?</font></span></div>
 
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            <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">10</font></span></div>
 
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            </td>
 
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            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684">
 
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            <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;</font><font size="2">What is Evolution?</font></span></div>
 
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            <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;&nbsp;&nbsp;&nbsp; Darwinian evolution</font></span></div>
 
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            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 40.8pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="68">
 
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            <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">11</font></span></div>
 
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            <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;</font><font size="2">What is Sequence?</font></span></div>
 
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            <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">12</font></span></div>
 
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            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684">
 
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            <div style="text-align: left; margin: 0cm 0cm 8pt; text-indent: 5pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">What is Cancer?</font></span></div>
 
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            <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">13</font></span></div>
 
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            <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;</font><font size="2">What is Aging?</font></span></div>
 
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            <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;&nbsp;&nbsp;&nbsp; Measuring aging</font></span></div>
 
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            <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">14</font></span></div>
 
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            <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;</font><font size="2">Research Report presentation</font></span></div>
 
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            <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">15</font></span></div>
 
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            <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;</font><font size="2">Research Report presentation</font></span></div>
 
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<div style="margin: 0cm 0cm 8pt"><font size="2">&nbsp;</font></div>
 
 
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Latest revision as of 10:37, 7 March 2024

Jong Bhak's Genomics course syllabus. 2024 (Spring)
(No mid-term exam)
Weekly Schedule
Week Contents: Students are required to click on all the links and listen to the Youtube channels.
01 Introduction to Jong Bhak's genomics course
What is science?
What is life?
What is DNA? What is RNA?
What is transcription and translation?
What is information?
02 What is Sequencing in Genomics and Omics? 
  History of Genome Sequencing by Ahmet Sacan


How we produce genomic big data?
Sanger sequencing
What is a protein?  
03 Next generation sequencing.
Illumina sequencing
Nanoball sequencing
Nanopore sequencing.
04 Epigenomics
Methylation sequencing (Epigenomic sequencing).
05 DNA and sequence alignment.
Dynamic programming
Computers for genomics (Bioinformatics).
Turing machine
06 Genome Assembly. (building genomes)
07 Phylogenetic tree (tree of life): The origin of Korean people using genome data.
08 Comparative Genomics (how we can compare life using genomes)
  * Intro of Comparative Genomics by Jong Bhak
09 Evolution (genome perspective): Is Darwinian evolution correct?
10  The human genome project
11  Korean genome project: Who are Koreans?
12 Whale genome analyses
13  Tiger genome analyses
14 Cancer genomes and Genomes and aging (telomere, Epigenomic reprogramming)
15 Research Report presentation (SELF)

 

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