Difference between revisions of "Ilsun Yun/Homework1"

From Biolecture.org
imported>Ilsun yun
(Created page with "<p>Genomic related words.</p> <ol> <li>IPScell-a type of pluripotent stem cell that can be generated directly from adult cells.</li> <li>polyphyodont-any animal whose teeth ar...")
 
imported>Ilsun yun
 
Line 39: Line 39:
 
<li>hierarchal shotgun sequencing-a genome sequencing strategy in which small DNA fragments are mapped prior to DNA sequencing.</li>
 
<li>hierarchal shotgun sequencing-a genome sequencing strategy in which small DNA fragments are mapped prior to DNA sequencing.</li>
 
<li>whole genome shotgun sequencing-a genome sequencing strategy in which the entire genome is isolated and sheared into small and large fragments and cloned into vectors.</li>
 
<li>whole genome shotgun sequencing-a genome sequencing strategy in which the entire genome is isolated and sheared into small and large fragments and cloned into vectors.</li>
<li>Human Genome Project-a 13-year effort with US department of health to find:<br />
 
1.a genetic linkage map of the human genome<br />
 
2.a physical map of the human genome<br />
 
3.the DNA sequence of the entire human genome<br />
 
4.technology for management of the human genome<br />
 
5.analyze the genomes of other model organisms<br />
 
6.develop programs focused on on ethical, legal, and social implications of results from human genome project.</li>
 
 
<li>pyrosequencing-Genomic DNA is broken into small 300 to 800bp fragments which are attached to beads via adaptors and emulsified in an oil/water mixture and isolated into droplets, which are amplified into many identical products.</li>
 
<li>pyrosequencing-Genomic DNA is broken into small 300 to 800bp fragments which are attached to beads via adaptors and emulsified in an oil/water mixture and isolated into droplets, which are amplified into many identical products.</li>
 
<li>comparative genomics-the study of differences of genomic variation between different populations</li>
 
<li>comparative genomics-the study of differences of genomic variation between different populations</li>

Latest revision as of 02:12, 1 December 2018

Genomic related words.

  1. IPScell-a type of pluripotent stem cell that can be generated directly from adult cells.
  2. polyphyodont-any animal whose teeth are continually replaced.
  3. gene therapy-the therapeutic delivery of nucleic acid into a patient's cells as a drug to treat disease.
  4. ctDNA-tumor-derived fragmented DNA in the bloodstream that is not associated with cells.
  5. CRISPR-Cas9-It can be used to edit genes within organisms. This type of gene editing process has a wide variety of applications including use as a basic biology research tool, development of biotechnology products, and potentially to treat diseases.
  6. allele-An alternate form of the same gene for a given trait
  7. zygote-Fertilized egg
  8. crossing over-crossing over is the process by which two chromosomes pair up and exchange sections of their DNA. This often occurs during prophase 1 of meiosis
  9. genome-the total genetic composition of an organism or species
  10. genomics-molecular analysis of the entire genome of a species
  11. functional genomics-the study of how the components of a genome interact to produce the traits of an organism
  12. mapping-the experimental process of determining the relative locations of genes or other segments of DNA along individual chromosomes
  13. cytogenic mapping-the localization of gene sequences within chromosomes that are viewed microscopically.
  14. linkage mapping-The use of frequency of genetic recombination between different genes to determine their relative spacing and order along a chromosome.
  15. physical mapping-The use of DNA cloning techniques to determine the location and distance between genes and other DNA regions.
  16. genetic map-A chart that describes the relative locations of genes and other DNA segments along a chromosome.
  17. locus-the site within a genetic map where a specific gene or other DNA segment is found.
  18. chromosome painting-the use of computer imaging software to assign different colors to different fluorescent probes.
  19. molecular marker-a segment of DNA found at a specific site along a chromosome with properties that enable it to be uniquely recognized using molecular tools such as polymerase chain reaction and gel electrophoresis.
  20. polymorphic-difference from individual to individual within a population (gene sequences)
  21. RFLP map-a linkage map composed of many RFLP markers
  22. lod score method-statistical test used to determine the likelihood of linkage between two RFLP's.
  23. microsatellites-short repetitive sequences that are abundantly interspersed throughout a species' genome and vary considerably in length among individuals.
  24. sequence tagged site-a short segment of DNA (usually 100-400bp), the base sequence of which is found to be unique within the entire genome. Found by PCR
  25. founder-a single individual who is the origin for a disease-causing allele.
  26. contig-a collection of clones that contain contiguous, overlapping pieces of chromosomal DNA. Represents a physical map of the chromosome.
  27. artificial chromosomes-large cloning vectors that can accomodate much larger sizes of DNA inserts. Behave like chromosomes inside living cells.
  28. yeast artificial chromosome-first artificial chromosome to be created. Can contain a cloned insert up to 2 million bp in length.
  29. bacterial artificial chromosomes-artificial chromosomes developed from bacterial f factors. Can handle DNA inserts up to 300,000bp. Easier to use than YAC's as they are inserted into a circular chromosome and transformed into E. Coli
  30. cosmid-
    a hybrid between a plasmid vector and a phage lambda. Its DNA can replicate within a cell like a plasmid or be packaged into a protein coat like a phage. Can accept DNA inserts in the tens of thousands of base pairs.
  31. positional cloning-a strategy in which a gene is cloned based on its mapped position along a chromosome.
  32. chromosome walking-a method of positional cloning in which a mapped gene or RFLP marker provides a starting point to molecularly "walk" toward a gene of interest via overlapping clones.
  33. subcloning-The procedure of making smaller DNA clones from larger ones.
  34. shotgun sequencing-a sequencing technique in which DNA fragments to be sequenced are randomly generated from larger DNA fragments.
  35. hierarchal shotgun sequencing-a genome sequencing strategy in which small DNA fragments are mapped prior to DNA sequencing.
  36. whole genome shotgun sequencing-a genome sequencing strategy in which the entire genome is isolated and sheared into small and large fragments and cloned into vectors.
  37. pyrosequencing-Genomic DNA is broken into small 300 to 800bp fragments which are attached to beads via adaptors and emulsified in an oil/water mixture and isolated into droplets, which are amplified into many identical products.
  38. comparative genomics-the study of differences of genomic variation between different populations
  39. DNA-Deoxyribonucleic acid; the hereditary material of almost all cells that makes up their genomes.
  40. Inheritance-The passing down of traits from one generation to the next, at the level of the cell or the organism.
  41. Mitochondrial DNA-A circular DNA molecule that can only be found in the mitochondria of all cells in the body and is inherited only from the mother.
  42. Nuclear Genome-The complete set of 23 pairs of chromosomes that reside within the nucleus of the cell.
  43. Genotype-The genetic makeup of an organism, specifically the composition of alleles.
  44. Phenotype-The physical makeup, or appearance, of an organism or individual trait.
  45. Relative Risk-An individual's risk based on family or genetic background compared to the general population.
  46. Western Blot-Transfer protein to gel matrix to separate. Use a membrane which has antibodies on it to blot the gel so that desired antigens will be picked up to be observed.
  47. miRNA-small non coding RNA that functions in RNA silencing and post transcriptional regulation of gene expression. They do so by binding to the 3'-UTR(untranslated region) of the target mRNA and repress protein translation
  48. DNA ligase-Enzyme that helps fix the backbone of DNA by forming phosphodiester bonds