Difference between revisions of "Homo sapiens RAD51"

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<p><span style="font-family:arial,helvetica,sans-serif">&gt;[[Perl Code of RAD51]]</span></p>
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<p><span style="font-size:14px">&gt;[[Perl Code of RAD51]]</span></p>
  
 
<p>&nbsp;</p>
 
<p>&nbsp;</p>
  
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<p><span style="font-family:arial,helvetica,sans-serif">[DNA sequence]</span></p>
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<p><span style="font-size:14px">[DNA sequence]</span></p>
  
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<p><span style="font-family:arial,helvetica,sans-serif">ATGGCAATGCAGATGCAGCTTGAAGCAAATGCAGATACTTCAGTGGAAGAAGAAAGCTTTGGCCCACAACCCATTTCACGGTTAGAGCAGTGTGGCATAAATGCCAACGATGTGAAGAAATTG</span></p>
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<p><span style="font-size:14px">ATGGCAATGCAGATGCAGCTTGAAGCAAATGCAGATACTTCAGTGGAAGAAGAAAGCTTTGGCCCACAACCCATTTCACGGTTAGAGCAGTGTGGCATAAATGCCAACGATGTGAAGAAATTG</span></p>
  
−
<p><span style="font-family:arial,helvetica,sans-serif">GAAGAAGCTGGATTCCATACTGTGGAGGCTGTTGCCTATGCGCCAAAGAAGGAGCTAATAAATATTAAGGGAATTAGTGAAGCCAAAGCTGATAAAATTCTGGCTGAGGCAGCTAAATTAGTTCC</span></p>
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<p><span style="font-size:14px">GAAGAAGCTGGATTCCATACTGTGGAGGCTGTTGCCTATGCGCCAAAGAAGGAGCTAATAAATATTAAGGGAATTAGTGAAGCCAAAGCTGATAAAATTCTGGCTGAGGCAGCTAAATTAGTTCC</span></p>
  
−
<p><span style="font-family:arial,helvetica,sans-serif">AATGGGTTTCACCACTGCAACTGAATTCCACCAAAGGCGGTCAGAGATCATACAGATTACTACTGGCTCCAAAGAGCTTGACAAACTACTTCAAGGTGGAATTGAGACTGGATCTATCACAGAA</span></p>
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<p><span style="font-size:14px">AATGGGTTTCACCACTGCAACTGAATTCCACCAAAGGCGGTCAGAGATCATACAGATTACTACTGGCTCCAAAGAGCTTGACAAACTACTTCAAGGTGGAATTGAGACTGGATCTATCACAGAA</span></p>
  
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<p><span style="font-family:arial,helvetica,sans-serif">ATGTTTGGAGAATTCCGAACTGGGAAGACCCAGATCTGTCATACGCTAGCTGTCACCTGCCAGCTTCCCATTGACCGGGGTGGAGGTGAAGGAAAGGCCATGTACATTGACACTGAGGGTACC</span></p>
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<p><span style="font-size:14px">ATGTTTGGAGAATTCCGAACTGGGAAGACCCAGATCTGTCATACGCTAGCTGTCACCTGCCAGCTTCCCATTGACCGGGGTGGAGGTGAAGGAAAGGCCATGTACATTGACACTGAGGGTACC</span></p>
  
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<p><span style="font-family:arial,helvetica,sans-serif">TTTAGGCCAGAACGGCTGCTGGCAGTGGCTGAGAGGTATGGTCTCTCTGGCAGTGATGTCCTGGATAATGTAGCATATGCTCGAGCGTTCAACACAGACCACCAGACCCAGCTCCTTTATCAAG</span></p>
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<p><span style="font-size:14px">TTTAGGCCAGAACGGCTGCTGGCAGTGGCTGAGAGGTATGGTCTCTCTGGCAGTGATGTCCTGGATAATGTAGCATATGCTCGAGCGTTCAACACAGACCACCAGACCCAGCTCCTTTATCAAG</span></p>
  
−
<p><span style="font-family:arial,helvetica,sans-serif">CATCAGCCATGATGGTAGAATCTAGGTATGCACTGCTTATTGTAGACAGTGCCACCGCCCTTTACAGAACAGACTACTCGGGTCGAGGTGAGCTTTCAGCCAGGCAGATGCACTTGGCCAGGTT</span></p>
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<p><span style="font-size:14px">CATCAGCCATGATGGTAGAATCTAGGTATGCACTGCTTATTGTAGACAGTGCCACCGCCCTTTACAGAACAGACTACTCGGGTCGAGGTGAGCTTTCAGCCAGGCAGATGCACTTGGCCAGGTT</span></p>
  
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<p><span style="font-family:arial,helvetica,sans-serif">TCTGCGGATGCTTCTGCGACTCGCTGATGAGTTTGGTGTAGCAGTGGTAATCACTAATCAGGTGGTAGCTCAAGTGGATGGAGCAGCGATGTTTGCTGCTGATCCCAAAAAACCTATTGGAGGA</span></p>
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<p><span style="font-size:14px">TCTGCGGATGCTTCTGCGACTCGCTGATGAGTTTGGTGTAGCAGTGGTAATCACTAATCAGGTGGTAGCTCAAGTGGATGGAGCAGCGATGTTTGCTGCTGATCCCAAAAAACCTATTGGAGGA</span></p>
  
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<p><span style="font-family:arial,helvetica,sans-serif">AATATCATCGCCCATGCATCAACAACCAGATTGTATCTGAGGAAAGGAAGAGGGGAAACCAGAATCTGCAAAATCTACGACTCTCCCTGTCTTCCTGAAGCTGAAGCTATGTTCGCCATTAATGC</span></p>
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<p><span style="font-size:14px">AATATCATCGCCCATGCATCAACAACCAGATTGTATCTGAGGAAAGGAAGAGGGGAAACCAGAATCTGCAAAATCTACGACTCTCCCTGTCTTCCTGAAGCTGAAGCTATGTTCGCCATTAATGC</span></p>
  
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<p><span style="font-family:arial,helvetica,sans-serif">AGATGGAGTGGGAGATGCCAAAGACTGA</span></p>
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<p><span style="font-size:14px">AGATGGAGTGGGAGATGCCAAAGACTGA</span></p>
  
 
<p>&nbsp;</p>
 
<p>&nbsp;</p>
  
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<p><span style="font-family:arial,helvetica,sans-serif">[Amino acid sequence]</span></p>
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<p><span style="font-size:14px">[Amino acid sequence]</span></p>
  
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<p><span style="font-family:arial,helvetica,sans-serif">MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFR<br />
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<p><span style="font-size:14px">MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFR<br />
 
TGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEF<br />
 
TGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEF<br />
 
GVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD</span></p>
 
GVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD</span></p>
  
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<p><span style="font-family:arial,helvetica,sans-serif">[Second structure]</span></p>
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<p>&nbsp;</p>
  
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<p>&nbsp;</p>
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<p><span style="font-size:14px">[Second structure]</span></p>
 +
 
 +
<p>http://www.compbio.dundee.ac.uk/jpred4/results/jp_NixMuY3/jp_NixMuY3.results.html</p>
 +
 
 +
<p>Simple result&nbsp;: (<span style="color:#FF0000">H</span>=alpha helix&nbsp;<span style="color:#DAA520">E</span>=beta sheet)</p>
 +
 
 +
<p><code>---<span style="color:#FF0000">HHHHHHH</span>-----<span style="color:#FF0000">HH</span>----------<span style="color:#FF0000">H</span>------<span style="color:#FF0000">HHHHHHHHH</span>----<span style="color:#FF0000">HHHHHHH</span>--<span style="color:#FF0000">HHHHHHHH</span>---<span style="color:#FF0000">HHHHHHHHHHHHHH</span>-------<span style="color:#FF0000">HHHHHHHHH</span>---------<span style="color:#FF0000">HHHHHHH</span>-------<span style="color:#DAA520">EEEEEE</span>-----<span style="color:#FF0000">HHHHHHHHHHHHHHH</span>---------<span style="color:#DAA520">EEEEEE</span>------<span style="color:#FF0000">HHHHHHHHH</span>------<span style="color:#FF0000">HHHHHHHH</span><span style="color:#DAA520">EEE</span>---<span style="color:#FF0000">HHHHHHHHHHHHHHH</span>-----<span style="color:#DAA520">EEEEE</span>----------------<span style="color:#FF0000">HHHHHHHHHHHHHHHHHHHHH</span>---<span style="color:#DAA520">EEEEEEEEEE</span>-------------------<span style="color:#FF0000">HHHH</span>----<span style="color:#DAA520">EEEEE</span>-----<span style="color:#DAA520">EEEEEEEE</span>-------<span style="color:#DAA520">EEEEEEE</span>---------</code></p>
  
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<p><span style="font-family:arial,helvetica,sans-serif">______________________________________________________________________________________________________________________________________________________________</span></p>
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<p><span style="font-size:14px">__________________________________________________________________________________________________________________________________________________________________________________________</span></p>
  
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<p><span style="font-family:arial,helvetica,sans-serif">[[H.W.1]]</span></p>
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<p><span style="font-size:14px">[[H.W.1]]</span></p>

Latest revision as of 13:11, 26 May 2016

>Perl Code of RAD51

 

[DNA sequence]

ATGGCAATGCAGATGCAGCTTGAAGCAAATGCAGATACTTCAGTGGAAGAAGAAAGCTTTGGCCCACAACCCATTTCACGGTTAGAGCAGTGTGGCATAAATGCCAACGATGTGAAGAAATTG

GAAGAAGCTGGATTCCATACTGTGGAGGCTGTTGCCTATGCGCCAAAGAAGGAGCTAATAAATATTAAGGGAATTAGTGAAGCCAAAGCTGATAAAATTCTGGCTGAGGCAGCTAAATTAGTTCC

AATGGGTTTCACCACTGCAACTGAATTCCACCAAAGGCGGTCAGAGATCATACAGATTACTACTGGCTCCAAAGAGCTTGACAAACTACTTCAAGGTGGAATTGAGACTGGATCTATCACAGAA

ATGTTTGGAGAATTCCGAACTGGGAAGACCCAGATCTGTCATACGCTAGCTGTCACCTGCCAGCTTCCCATTGACCGGGGTGGAGGTGAAGGAAAGGCCATGTACATTGACACTGAGGGTACC

TTTAGGCCAGAACGGCTGCTGGCAGTGGCTGAGAGGTATGGTCTCTCTGGCAGTGATGTCCTGGATAATGTAGCATATGCTCGAGCGTTCAACACAGACCACCAGACCCAGCTCCTTTATCAAG

CATCAGCCATGATGGTAGAATCTAGGTATGCACTGCTTATTGTAGACAGTGCCACCGCCCTTTACAGAACAGACTACTCGGGTCGAGGTGAGCTTTCAGCCAGGCAGATGCACTTGGCCAGGTT

TCTGCGGATGCTTCTGCGACTCGCTGATGAGTTTGGTGTAGCAGTGGTAATCACTAATCAGGTGGTAGCTCAAGTGGATGGAGCAGCGATGTTTGCTGCTGATCCCAAAAAACCTATTGGAGGA

AATATCATCGCCCATGCATCAACAACCAGATTGTATCTGAGGAAAGGAAGAGGGGAAACCAGAATCTGCAAAATCTACGACTCTCCCTGTCTTCCTGAAGCTGAAGCTATGTTCGCCATTAATGC

AGATGGAGTGGGAGATGCCAAAGACTGA

 

[Amino acid sequence]

MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFR
TGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEF
GVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD

 

[Second structure]

http://www.compbio.dundee.ac.uk/jpred4/results/jp_NixMuY3/jp_NixMuY3.results.html

Simple result : (H=alpha helix E=beta sheet)

---HHHHHHH-----HH----------H------HHHHHHHHH----HHHHHHH--HHHHHHHH---HHHHHHHHHHHHHH-------HHHHHHHHH---------HHHHHHH-------EEEEEE-----HHHHHHHHHHHHHHH---------EEEEEE------HHHHHHHHH------HHHHHHHHEEE---HHHHHHHHHHHHHHH-----EEEEE----------------HHHHHHHHHHHHHHHHHHHHH---EEEEEEEEEE-------------------HHHH----EEEEE-----EEEEEEEE-------EEEEEEE---------

__________________________________________________________________________________________________________________________________________________________________________________________

H.W.1

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