imported>Yeong Jae Kim |
imported>Yeong Jae Kim |
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| | <p><strong>1. Learn <a href="http://biolecture.org/index.php/Perl" title="Perl">Perl</a> programming language and learn bioinformatics using it.</strong></p> | | <p><strong>1. Learn <a href="http://biolecture.org/index.php/Perl" title="Perl">Perl</a> programming language and learn bioinformatics using it.</strong></p> |
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| − | <p> 1) Install and Learn Bioperl</p> | + | <p> [[1) Install and Learn Bioperl]] </p> |
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| − | <p> 2) Make a perl program </p> | + | <p> [[2) Make a perl program translating 'all' combinations of triple bases into amino acids]]</p> |
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| − | <p><a href="http://biolecture.org/index.php?title=Make_a_Perl_program_translating_%27all%27_combinations_of_triple_bases_into_amino_acids&action=edit&redlink=1" title="Make a Perl program translating 'all' combinations of triple bases into amino acids (page does not exist)">Make a Perl program translating 'all' combinations of triple bases into amino acids</a></p> | + | <p> [[3) Pick 5 protein sequences and predict their secondary structures using available prediction programs]]</p> |
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| − | <ul> | + | <p> [[4) Open and re-write one FASTA file containing one protein sequence of TERT]]</p> |
| − | <li><a href="http://biolecture.org/index.php?title=Install_and_Learn_BioPerl&action=edit&redlink=1" title="Install and Learn BioPerl (page does not exist)">Install and Learn BioPerl</a></li>
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| − | <li><a href="http://biolecture.org/index.php?title=Make_a_Perl_program_translating_%27all%27_combinations_of_triple_bases_into_amino_acids&action=edit&redlink=1" title="Make a Perl program translating 'all' combinations of triple bases into amino acids (page does not exist)">Make a Perl program translating 'all' combinations of triple bases into amino acids</a></li>
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| − | <li><a href="http://biolecture.org/index.php?title=Pick_5_protein_sequences_and_predict_their_secondary_structures_using_available_prediction_programs&action=edit&redlink=1" title="Pick 5 protein sequences and predict their secondary structures using available prediction programs (page does not exist)">Pick 5 protein sequences and predict their secondary structures using available prediction programs</a></li>
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| − | <li><a href="http://biolecture.org/index.php?title=Open_and_re-write_one_FASTA_file_containing_one_protein_sequence_of_TERT&action=edit&redlink=1" title="Open and re-write one FASTA file containing one protein sequence of TERT (page does not exist)">Open and re-write one FASTA file containing one protein sequence of TERT</a></li>
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| − | <li><a href="http://biolecture.org/index.php?title=Create_a_FASTA_file_with_a_sequence._Open_it_and_reverse_the_sequence_of_it_and_print_it_out_in_another_FASTA_file&action=edit&redlink=1" title="Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file (page does not exist)">Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file</a></li>
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| − | <li><a href="http://biolecture.org/index.php?title=Extract_a_sequence_MKKTGIKG_from_ASMKATAHQMKKTGIKGMSTYALLRL_and_print_it_out_in_a_file&action=edit&redlink=1" title="Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file (page does not exist)">Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file</a></li>
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| − | <li><a href="http://biolecture.org/index.php?title=In_a_multi-sequence_FASTA_file,_produce_statistics_such_as_sequence_number,_average_seq_length,_GC_content,_AT_content,_etc&action=edit&redlink=1" title="In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc (page does not exist)">In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc</a></li>
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| − | <li><a href="http://biolecture.org/index.php?title=Align_two_protein_sequences_using_a_dynamic_programming_method_in_Perl&action=edit&redlink=1" title="Align two protein sequences using a dynamic programming method in Perl (page does not exist)">Align two protein sequences using a dynamic programming method in Perl</a></li>
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| − | <li><a href="http://biolecture.org/index.php?title=Randomly_generate_five_100_AA_long_protein_sequences_and_store_them_in_a_FASTA_file&action=edit&redlink=1" title="Randomly generate five 100 AA long protein sequences and store them in a FASTA file (page does not exist)">Randomly generate five 100 AA long protein sequences and store them in a FASTA file</a></li>
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| − | <li><a href="http://biolecture.org/index.php?title=Create_a_flat_text_file_database_of_protein_sequences_with_hash_function_in_Perl&action=edit&redlink=1" title="Create a flat text file database of protein sequences with hash function in Perl (page does not exist)">Create a flat text file database of protein sequences with hash function in Perl</a></li>
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| − | </ul> | |
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| − | <p> </p> | + | <p> [[5) Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file]]</p> |
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| | + | <p> [[6) Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file]]</p> |
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| | + | <p> [[7) In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc]]</p> |
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| | + | <p> [[8) Align two protein sequences using a dynamic programming method in perl]]</p> |
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| | + | <p> [[9) Randomly generate five 100 AA long protein sequences and store them in a FASTA file]]</p> |
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| | + | <p> [[10) Create a flat text file database of protein sequences with has functino in Perl]]</p> |
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| | <p> </p> | | <p> </p> |
