Difference between revisions of "HW1 - Predicting Protein Structure"

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imported>Kujin Kwon
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imported>Kujin Kwon
 
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<td>Submitted Sequence in&nbsp;<a href="http://zhanglab.ccmb.med.umich.edu/FASTA/" target="_blank">FASTA format</a></td>
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Latest revision as of 21:39, 17 June 2016

Submitted Sequence in FASTA format

 

>protein

MRLPAQLLGLLMLWVPGSSGDVVMTQSPLSLPVTLGQPASISCRSSQSLVHSDGNTYLNW
FQQRPGQSPRRLIYRVSNRDSGVPDRFSGSGSGTDFTLKISRVEAEDVGLYYCMQHTHWS

PITFGQGTRLEIKR
 
  Predicted Secondary Structure

 

Sequence                   20                  40                  60                  80                 100                 120

                   |                   |                   |                   |                   |                   |              

MRLPAQLLGLLMLWVPGSSGDVVMTQSPLSLPVTLGQPASISCRSSQSLVHSDGNTYLNWFQQRPGQSPRRLIYRVSNRDSGVPDRFSGSGSGTDFTLKISRVEAEDVGLYYCMQHTHWSPITFGQGTRLEIKR
Prediction CCCHHHHHHHHHHHCCCCCCCSSSSCCCCCSSSCCCCCSSSSSSCCCCCCCCCCCCSSSSSCCCCCCCCSSSSSCCCCCCCCCCCCCCCCCCCCCSSSSSCCCCHHHCSSSSSSCCCCCCCCCCCCCCSSSSCC
Conf.Score 97258999999841689971077853187254489998898886787623578983578751398999707666143136889988232665887778888989758989865216999995237974875779
  H:Helix; S:Strand; C:Coil
 
  Predicted Solvent Accessibility

 

Sequence                   20                  40                  60                  80                 100                 120

                   |                   |                   |                   |                   |                   |              

MRLPAQLLGLLMLWVPGSSGDVVMTQSPLSLPVTLGQPASISCRSSQSLVHSDGNTYLNWFQQRPGQSPRRLIYRVSNRDSGVPDRFSGSGSGTDFTLKISRVEAEDVGLYYCMQHTHWSPITFGQGTRLEIKR
Prediction 75331313131210233341302011234414034634040403122213444443101011234643132002301436332033232333323230404423341202000103463313101432333348
 

Values range from 0 (buried residue) to 9 (highly exposed residue)

 

 

 
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