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| − | <p style="text-align: center;"><span style="font-size:36px"><Index of Chapter 11></span></p> | + | <p>[[genome]]</p> |
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| − | <p><span style="color:#0000CD"><strong>Introduction to systems biology</strong></span></p> | + | <p>[[sequencing]]</p> |
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| − | <p>-Two parallel networks : physical and logical</p> | + | <p>[[alignment]]</p> |
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| − | <p>-Statics and dynamics of networks</p> | + | <p>[[genomics]]</p> |
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| − | <p><span style="color:#0000CD"><strong>Pictures of networks as graphs</strong></span></p> | + | <p>[[omics]]</p> |
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| − | <p>-Trees</p> | + | <p>[[transcriptomics]]</p> |
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| − | <p><span style="color:#0000CD"><strong>Sources of ideas for systems biology</strong></span></p> | + | <p>[[epigenomics]]</p> |
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| − | <p>-Complexity of sequences</p> | + | <p>[[microbiomics]]</p> |
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| − | <p>-Shannon's definition of entropy</p> | + | <p>[[phenomics]]</p> |
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| − | <p>-Randomness of sequences</p> | + | <p>[[geromics]]</p> |
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| − | <p>-Static and dynamic complexity</p> | + | <p>[[Youtube movie]]</p> |
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| − | <p>-Computational complexity</p> | + | <p>---------------------------------------------------------------------------------</p> |
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| − | <p><span style="color:#0000CD"><strong>The metabolome</strong></span></p> | + | <p>[[HW_S]]</p> |
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| − | <p>-Classification and assignment of protein function</p>
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| − | <p>-Metabolic networks </p>
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| − | <p>-Databases of metabolic pathways</p>
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| − | <p>-Methionine synthesis in Escherichia coli</p>
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| − | <p>-The kyoto Encyclopedia of genes and genomes (KEGG)</p>
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| − | <p>-Evolution and phylogeny of metabolic pathways</p>
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| − | <p>-Carbohydrate metabolism in archaea</p>
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| − | <p>-Reconstruction of metabolic networks</p>
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| − | <p><span style="color:#0000CD"><strong>Regulatory networks</strong></span></p>
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| − | <p>-Signal transduction and transcriptional control</p>
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| − | <p>-Structures of regulatory networks</p>
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| − | <p><span style="color:#0000FF"><strong>Dynamics , stability , and robustness</strong></span></p>
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| − | <p>-Robustness through redundancy</p>
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| − | <p>-Dynamic modelling</p>
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| − | <p><span style="color:#0000CD"><strong>Protein interaction networks</strong></span></p>
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| − | <p>-Structural biology of regulatory networks</p>
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| − | <p><span style="color:#0000CD"><strong>Protein-DNA interactions</strong></span></p>
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| − | <p>-Structural themes in protein-DNA binding and sequence recognition</p>
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| − | <p>-An album of transcription regulators</p>
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| − | <p><span style="color:#0000CD"><strong>Gene regulation </strong></span></p>
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| − | <p>-The transcriptional regulatory network of Escherichia coli</p>
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| − | <p>-Regulation of the lactose operon in E.Coli.</p>
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| − | <p><span style="color:#0000CD"><strong>The genetic regulatory network od Saccharomyces cerevisiae</strong></span></p>
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| − | <p>-Adaprability of the yeast regulatory network.</p>
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| − | <p> </p>
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