Difference between revisions of "BuKyung Create a flat text file database of protein sequences with hash function in Perl"

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imported>Baik BuKyung
(Created page with "<p>Back to Baik BuKyung</p> <hr /> <p> </p>")
 
imported>Baik BuKyung
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<hr />
 
<hr />
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<p><span style="font-size:24px">Source code:</span></p>
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<p>&nbsp;</p>
 
<p>&nbsp;</p>
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<hr />
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<div>
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<div>#!/usr/bin/perl
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<p>&nbsp;use strict;<br />
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&nbsp;use warnings;<br />
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&nbsp;open FH, &quot;&gt;&quot;, &quot;outer.fasta&quot; or die &quot;$!\n&quot;;<br />
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&nbsp;<br />
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&nbsp;my $Original_sequence=&quot;ASMKATAHQMKKTGIKGMSTYALLRL&quot;;<br />
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&nbsp;my $Extracted_sequence=&quot;MKKTGIKG&quot;;<br />
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&nbsp;if($Original_sequence =~ /$Extracted_sequence/){<br />
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&nbsp;&nbsp;print FH (&quot;Original sequence is&nbsp;:&quot;,$Original_sequence,&quot;\nExtracted sequence is&nbsp;:&quot;,$Extracted_sequence);<br />
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}<br />
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&nbsp;else{<br />
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&nbsp;&nbsp;print FH ($Extracted_sequence, &quot; is not in the &quot;, $Original_sequence);</p>
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&nbsp;}</div>
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<div>
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<hr />
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<p>&nbsp;</p>
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<p><img alt="" src="http://biolecture.org/ckfinder/userfiles/images/%EC%BA%A1%EC%B2%9820(1).PNG" style="height:272px; width:767px" /></p>
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</div>
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</div>
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<p>&nbsp;</p>
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<div>
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<hr />
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<p><span style="font-size:24px">Result</span></p>
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<p>&nbsp;</p>
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<p>&nbsp;</p>
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</div>

Revision as of 05:56, 17 June 2016

Back to Baik BuKyung


Source code:

 


#!/usr/bin/perl

 use strict;
 use warnings;
 open FH, ">", "outer.fasta" or die "$!\n";
 
 my $Original_sequence="ASMKATAHQMKKTGIKGMSTYALLRL";
 my $Extracted_sequence="MKKTGIKG";
 if($Original_sequence =~ /$Extracted_sequence/){
  print FH ("Original sequence is :",$Original_sequence,"\nExtracted sequence is :",$Extracted_sequence);
}
 else{
  print FH ($Extracted_sequence, " is not in the ", $Original_sequence);

 }

 

 


Result