All the videos for Genomics 2021 in one big page

Jong Bhak's 2021 Genomics Lecture videos. All on this page.

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UNIST Genomics course 2021  |   Jong Bhak's Genomics Syllabus

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Genomics intro:  https://youtu.be/kflrpWKjGBU 

• What is Science? Asking Questions and Defining Problems - YouTube
• What is life? What is life"-lecture: Denis Noble - YouTube
• What is information: The Power And Story Of Information | Order and Disorder | Spark - YouTube
• What is DNA?  What is DNA? - YouTube
• What is DNA replication?  DNA Replication - YouTube
• What is a genome? What is a genome? - YouTube (British)
• What is a chromosome?  What are Chromosomes? - YouTube
• How DNA was discovered and DNA structure? DNA and RNA - Part 1 - YouTube

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Genome sequencing: Try to understand what a string/sequence is. How do we sequence DNA, RNA, and Proteins?

• Sanger genome sequencing: The Sanger Method of DNA Sequencing - YouTube  |   How Sanger Sequencing Works? (Classic Sanger Method) - YouTube
• What is a string and a sequence?
• What is a protein? What is a Protein? (from PDB-101) - YouTube
• Protein sequencing as a comparison Proteins! - Amino Acid Sequencing Explained - YouTube

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Next Generation Sequencing: Learn what NGS is.

• NGS(차세대 유전체 해독 기술) - YouTube by GRF. Korean.
• What is Next Generation Sequencing? Next Generation Sequencing (NGS) - An Introduction - YouTube
•  * Long lecture: Next-Generation Sequencing Technologies (2016) - Elaine Mardis - YouTube
• Illumina NGS sequencing  Illumina Sequencing by Synthesis - YouTube
• Nanoball NGS sequencing by MGI(Complete genomics): Nanoball Sequencing - YouTube
• Sample preparation: Next Generation Sequencing 2: Illumina NGS Sample Preparation - Eric Chow (UCSF) - YouTube 
• Nanopore 'sequencing: How nanopore sequencing works - YouTube (short)
•   * Nanopore DNA sequencing - YouTube (longer)
• RNA-seq:  The Beginner's Guide to RNA-Seq - #ResearchersAtWork Webinar Series - YouTube

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Epigenomics lecture: Learn what epigenetic effect is in biology. How can environment affect genes directly?

• Epigenetics - YouTube
• Introduction to epigenetics - YouTube 
• EPIGENETICS & CHROMATIN STATES - An introduction to histone modifications & gene transcription roles - YouTube
  • Contents: 0:35​ Defining the epigenetic memory of gene expression 2:37​ Chromatin and histones 7:12​ Histone modifications 7:59​ Histone acetylation and reading by bromodomain proteins 12:02​ Histone methylation and reading by chromodomain proteins 19:17​ The complex language of histone modifications 21:53​ How a core set of marks help define chromatin states
•  * Howard Chang (Stanford, HHMI) 1: Epigenomic Technologies - YouTube
•  *  What is epigenetics? - Carlos Guerrero-Bosagna - YouTube
• Epigenetic 'sequencing (methylation sequencing):  Bisulfite Sequencing - detect DNA Methylation - YouTube
•  * Peter Laird: Epigenetics, DNA Methylation, and Arrays - YouTube

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Sequence 'alignment: Sequence alignment algorithms. How computers can align DNA?

• Comparing DNA Sequences - YouTube
• 5 Simple Steps for Solving Dynamic Programming Problems - YouTube
• *  Dynamic Programming - Learn to Solve Algorithmic Problems & Coding Challenges - YouTube

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Computers for genomics: Understand how computers work. Computing is something special. Life is a kind of computing.

• What does what in your computer? Computer parts Explained - YouTube
• Alan Turing - Celebrating the life of a genius - YouTube
• Turing Machines Explained - Computerphile - YouTube
• Turing Machines - YouTube
• Real physical machine: A Turing Machine - Overview - YouTube 
• Regular Grammar - YouTube
• Definition: Context-Free Grammars - YouTube
• Linux Explained in 2020: Just What is The Linux Kernel?! - YouTube

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Genome Assembly: Assembling a genome from short and long sequence data.

• Lecture Fundamentals of Genome Assembly - YouTube
• An overview of DNA sequence assembly - YouTube by Rob Edwards
• Naive DNA sequence assembly - YouTube by Rob Edwards
• Nanopore long reads assembly Nanopore Sequencing Technology and Tools for Genome Assembly - Damla Senol Cali - AACBB 2019 Talk - YouTube

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Phylogenetic tree (tree of life): Phylo tree is a bad but useful tool to understand genes and genomes.

• The origin of Korean people using genome data
• Phylogenetics - YouTube
• Creating a Phylogenetic Tree - YouTube

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Comparative Genomics: How we can compare life using genomes.

• What is Comparative Genomics? - YouTube
• Perspectives in Comparative Genomics and Evolution - YouTube
• Principal Component Analysis (PCA), Step-by-Step - YouTube

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Evolution (genome perspective): 

• Evolution vs Natural Selection - YouTube 
• Theory of Evolution: How did Darwin come up with it? - BBC News - YouTube
• Evolution - What Darwin Never Knew - NOVA Full Documentary HD - YouTube
• Is Darwinian evolution correct?
  •  Is evolution wrong? | Massimo Pigliucci, Zanna Clay, Tim Lewens - YouTube

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The human genome project

• CARTA: DNA–Neandertal and Denisovan Genomes;Neandertal Genes in Humans;Neandertal Interbreeding - YouTube
• Lessons from the Human Genome Project - YouTube

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Korean genome project: Who are Koreans?

• 게놈분석 통한 한국인 기원과 이동 동영상 - YouTube

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Whale genome analysis and whale shark genome analysis

• •  100살 사는 고래상어 게놈 분석…장수 비결 실마리 / YTN 사이언스 - YouTube
  •  The Evolutionary History of Whales - Cetacean Evolution Part 1 - YouTube

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Tiger genome analyses

• •  tiger genome project-PGI - YouTube

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Cancer genomes 

• * DNA Methylation and Cancer - Garvan Institute - YouTube

Genomes and aging (telomere)

• •  DNA Methylation | Stop DNA From Aging With TMG? - YouTube

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UNIST Genomics course 2021  |   Jong Bhak's Genomics Syllabus  |   Genomics 2021 Homework