Homo sapiens PCNA

From Biolecture.org
Revision as of 13:46, 26 May 2016 by imported>위민우

>Perl Code of PCNA

 

[DNA sequence]

ATGTTCGAGGCGCGCCTGGTCCAGGGCTCCATCCTCAAGAAGGTGTTGGAGGCACTCAAGGACCTCATCAACGAGGCCTGCTGGGATATTAGCTCCAGCGGTGTAAACCTGCAGAGCATGGA

CTCGTCCCACGTCTCTTTGGTGCAGCTCACCCTGCGGTCTGAGGGCTTCGACACCTACCGCTGCGACCGCAACCTGGCCATGGGCGTGAACCTCACCAGTATGTCCAAAATACTAAAATGCGC

CGGCAATGAAGATATCATTACACTAAGGGCCGAAGATAACGCGGATACCTTGGCGCTAGTATTTGAAGCACCAAACCAGGAGAAAGTTTCAGACTATGAAATGAAGTTGATGGATTTAGATGTTG

AACAACTTGGAATTCCAGAACAGGAGTACAGCTGTGTAGTAAAGATGCCTTCTGGTGAATTTGCATGTATATGCCGAGATCTCAGCCATATTGGAGATGCTGTTGTAATTTCCTGTGCAAAAGAC

GGAGTGAAATTTTCTGCAAGTGGAGAACTTGGAAATGGAAACATTAAATTGTCACAGACAAGTAATGTCGATAAAGAGGAGGAAGCTGTTACCATAGAGATGAATGAACCAGTTCAACTAACTT

TTGCACTGAGGTACCTGAACTTCTTTACAAAAGCCACTCCACTCTCTTCAACGGTGACACTCAGTATGTCTGCAGATGTACCCCTTGTTGTAGAGTATAAAATTGCGGATATGGGACACTTAAAAT

ACTACTTGGCTCCCAAGATCGAGGATGAAGAAGGATCTTAG

 

[Amino acid sequence]

MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIP

EQEYSCVVKMPSGEFACICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDE

EGS

 

[Second structure]

http://www.compbio.dundee.ac.uk/jpred4/results/jp_yBpiZbd/jp_yBpiZbd.results.html

Simple result : (H=alpha helix E=beta sheet)

<code>-<span style="color:#DAA520">EEEEE</span>--<span style="color:#FF0000">HHHHHHHHHHHHHHH</span>--<span style="color:#DAA520">EEEEE</span>---<span style="color:#DAA520">EEEEEEE</span>----<span style="color:#DAA520">EEEEEEEE</span>--------<span style="color:#DAA520">E</span>----<span style="color:#DAA520">EEEEE</span>-<span style="color:#FF0000">HHHHHHHHH</span>------<span style="color:#DAA520">EEEEEEE</span>----<span style="color:#DAA520">EEEEEEEE</span>----<span style="color:#DAA520">EEEEEE</span>-------------------<span style="color:#DAA520">EEEEE</span>--<span style="color:#FF0000">HHHHHHHHHH</span>-----<span style="color:#DAA520">EEEEEE</span>----<span style="color:#DAA520">EEEEEEE</span>---<span style="color:#DAA520">EEEEEEE</span>-----------<span style="color:#DAA520">EEE</span>-----<span style="color:#DAA520">EEEEE</span>-<span style="color:#FF0000">HHHHHHHHH</span>------<span style="color:#DAA520">EEEEEE</span>-----<span style="color:#DAA520">EEEEEE</span>-----<span style="color:#DAA520">EEEEEEE</span>---------</code>

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H.W.1