Difference between revisions of "Transforming DNA sequences into Amino acid sequences by using Perl programming"

Revision as of 14:27, 18 June 2016

1. Learn Perl programming language and learn bioinformatics using it.

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 <p>[[a. Install and Learn BioPerl]]<br />
-[[b. Make a Perl program translating &#39;all&#39; combinations of triple bases into amino acids]]<br />
+[[b. Make a Perl program translating &#39;all&#39; combinations of triple bases into amino acids]]</p>
-[[c. Pick 5 protein sequences and predict their secondary structures using available prediction programs]]<br />
-[[d. Open and re-write one FASTA file containing one protein sequence of TERT]]<br />
-[[e. Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file]]<br />
-[[f. Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file]]<br />
-[[g. In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc]]<br />
-[[h. Align two protein sequences using a dynamic programming method in Perl]]<br />
-[[i. Randomly generate five 100 AA long protein sequences and store them in a FASTA file]]<br />
-[[j. Create a flat text file database of protein sequences with hash function in Perl]]</p>