Open main menu

Biolecture.org β

Changes

Homework of week1-1

1,119 bytes removed, 00:38, 24 May 2016
Replaced content with "<p><span style="font-size:20px">Code for Translation DNA to AminoAcid (by Perl)</span></p> <p> </p> <p> </p>"
<p>Learn principle of perl</pspan style="font-size:20px"Code for Translation DNA to AminoAcid (by Perl)<p/span>https://qntm.org/files/perl/perl_kr.html</p>
<p>&nbsp;</p>
 
<p>install perl and editor(Padre the Perl IDE)</p>
 
<p>https://www.youtube.com/watch?time_continue=152&amp;v=R05XpUH876I</p>
<p>&nbsp;</p>
 
<p>1. Learn Perl programming language and learn bioinformatics using it.<br />
Install and Learn BioPerl<br />
Make a Perl program translating &#39;all&#39; combinations of triple bases into amino acids<br />
Pick 5 protein sequences and predict their secondary structures using available prediction programs<br />
Open and re-write one FASTA file containing one protein sequence of TERT<br />
Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file<br />
Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file<br />
In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc<br />
Align two protein sequences using a dynamic programming method in Perl<br />
Randomly generate five 100 AA long protein sequences and store them in a FASTA file<br />
Create a flat text file database of protein sequences with hash function in Perl<br />
&nbsp;</p>
Anonymous user