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Jong Bhak's Genomics Syllabus

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<div><div style="word-break: keep-all; margin: 0cm 0cm 8pt; line-height: 160%"><span style="font-size:24px">'''<span style="color:black">Jong Bhak's Genomics course syllabus.2021</span>'''</span></div> <div style="word-break: keep-all; margin: 0cm 0cm 8pt; line-height: 160%"><span style="font-size:24px">'''<span style="color:black">(No mid-term exam)</span>'''</span></div> <div style="word-break: keep-all; margin: 0cm 0cm 8pt; line-height: 160%"><span style="color:#FF0000"><span style="font-size:24px">'''* This syllabus can be changed any time in any year!'''</span></span></div> <div style="word-break: keep-all; margin: 0cm 0cm 8pt; line-height: 160%">'''<span style="font-size:10pt"><span style="line-height:160%"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="line-height:160%"><span style="font-family:" arial="" narrow",sans-serif"=""><span style="color:black">Weekly Schedule</span></span></span></span></span></span></span></span></span>'''
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:19px; background-color:#d6d6d6; border-top:1px solid black; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="line-height:160%"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="line-height:160%"><span style="font-family:" arial="" narrow",sans-serif"=""><span style="color:black">Week</span></span></span></span></span></span></span></span></span>| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:19px; background-color:#d6d6d6; border-top:1px solid black; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="line-height:160%"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="line-height:160%"><span style="font-family:" arial="" narrow",sans-serif"=""><span style="color:black">Contents</span></span></span></span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" narrow",sans-serif"=""><span style="color:black">01</span></span></span></span></span></span></span>| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:12pt"><span style="background:white"><span style="line-height:18.0pt"><span style="font-family:Gulim,sans-serif"><span style="font-family:" arial="" narrow",sans-serif"=""><span style="color:black">&nbsp;[[What is life? ]]<br/> &nbsp;What is information?&nbsp; <br/> [[Introduction to Jong Bhak's genomics course]]</span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" narrow",sans-serif"=""><span style="color:black">02</span></span></span></span></span></span></span>| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" narrow",sans-serif"="">What is Sequencing in Genomics and Omics? How we produce genomic big data?</span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" narrow",sans-serif"=""><span style="color:black">03</span></span></span></span></span></span></span>| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" narrow",sans-serif"="">Next generation sequencing. Nanopore sequencing.</span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" narrow",sans-serif"=""><span style="color:black">04</span></span></span></span></span></span></span>| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" narrow",sans-serif"="">Methylation sequencing (Epigenomic sequencing).</span></span></span></span></span>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" narrow",sans-serif"=""><span style="color:black">05</span></span></span></span></span></span></span>| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" narrow",sans-serif"=""><span style="color:black">DNA and sequence alignment. Computers for genomics (Bioinformatics).</span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" narrow",sans-serif"=""><span style="color:black">06</span></span></span></span></span></span></span>| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" narrow",sans-serif"="">Genome Assembly. (building genomes)</span></span></span></span></span>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" unicode="" ms",serif"=""><span style="color:black">07</span></span></span></span></span></span></span>| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" narrow",sans-serif"="">Phylogenetic tree (tree of life): The origin of Korean people using genome data.</span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" unicode="" ms",serif"=""><span style="color:black">08</span></span></span></span></span></span></span>| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" narrow",sans-serif"=""><span style="color:black">Comparative Genomics (how we can compare life using genomes)</span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" unicode="" ms",serif"=""><span style="color:black">09</span></span></span></span></span></span></span>| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" narrow",sans-serif"=""><span style="color:black">Evolution (genome perspective): Is Darwinian evolution correct?</span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" unicode="" ms",serif"=""><span style="color:black">10</span></span></span></span></span></span></span>| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" narrow",sans-serif"="">&nbsp;The human genome project</span></span></span></span></span>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" unicode="" ms",serif"=""><span style="color:black">11</span></span></span></span></span></span></span>| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:" malgun="" gothic",sans-serif"="">&nbsp;<span style="font-size:12.0pt"><span style="font-family:" arial="" narrow",sans-serif"="">The Korean genome project: Who are Koreans?</span></span></span></span></span>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" unicode="" ms",serif"=""><span style="color:black">12</span></span></span></span></span></span></span>| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" narrow",sans-serif"="">Whale genome analyses</span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" unicode="" ms",serif"=""><span style="color:black">13</span></span></span></span></span></span></span>| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" narrow",sans-serif"="">&nbsp;Tiger genome analyses</span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" unicode="" ms",serif"=""><span style="color:black">14</span></span></span></span></span></span></span>| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" narrow",sans-serif"=""><span style="color:black">Cancer genomes and Genomes and aging (telomere)</span></span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" unicode="" ms",serif"=""><span style="color:black">15</span></span></span></span></span></span></span>| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:" malgun="" gothic",sans-serif"=""><span style="font-size:12.0pt"><span style="font-family:" arial="" narrow",sans-serif"=""><span style="color:black">Research Report presentation</span></span></span></span></span></span></span>
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