Homework from Bioinformatics

1) Translating 'all' combinations of triple bases into amino acids

 2) 5 protein sequences and predicting their secondary structures

3) Re-writing a FASTA file containing one protein sequence of TERT

4) Creating a FASTA file and reversing the sequence of it and printing it out in another FASTA file

5) Extracting a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL

6) Producing statistics of a multi-sequence FASTA file: sequence number, average seq length, GC content, AT content

7) Aligning two protein sequences

8) Generating five 100 AA long protein sequences and storing them in a FASTA file

9) Creating a flat text file database of protein sequences with hash function in Perl

 

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Madina Seidualy