Homework

 

1. Learn Perl programming language and learn bioinformatics using it.

 1. Install and Learn Bioperl

 2. Make a perl program translating 'all' combinations of triple bases into amino acids

 3. Pick 5 protein sequences and predict their secondary structures using available prediction programs

 4. Open and re-write one FASTA file containing one protein sequence of TERT

 5. Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file

 6. Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file

 7. In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc

 8. Align two protein sequences using a dynamic programming method in perl

 9. Randomly generate five 100 AA long protein sequences and store them in a FASTA file

 10. Create a flat text file database of protein sequences with has functino in Perl

 

2. Define the most important 20 words in my life.

 Define the most important 20 words

 

3. Homework for Genomics

Homework for Genomics-SJH

 

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