Changes

<p style="text-align: center;"><span style="font-size:36px">&lt;Index of Chapter 11&gt;</span>[[genome]]</p>

<p><span style="color:#0000CD"><strong>Introduction to systems biology</strong></span>[[sequencing]]</p>

<p>-Two parallel networks : physical and logical[[alignment]]</p>

<p>-Statics and dynamics of networks[[genomics]]</p>

<p><span style="color:#0000CD"><strong>Pictures of networks as graphs</strong></span>[[omics]]</p>

<p>-Trees[[transcriptomics]]</p>

<p><span style="color:#0000CD"><strong>Sources of ideas for systems biology</strong></span>[[epigenomics]]</p>

<p>-Complexity of sequences[[microbiomics]]</p>

<p>-Shannon&#39;s definition of entropy[[phenomics]]</p>

<p>-Randomness of sequences[[geromics]]</p>

<p>-Static and dynamic complexity[[Youtube movie]]</p>

<p>-Computational complexity--------------------------------------------------------------------------------</p>

<p><span style="color:#0000CD"><strong>The metabolome</strong></span></p> <p>-Classification and assignment of protein function</p> <p>-Metabolic networks&nbsp;</p> <p>-Databases of metabolic pathways</p> <p>-Methionine synthesis in Escherichia coli</p> <p>-The kyoto Encyclopedia of genes and genomes (KEGG)</p> <p>-Evolution and phylogeny of metabolic pathways</p> <p>-Carbohydrate metabolism in archaea</p> <p>-Reconstruction of metabolic networks</p> <p><span style="color:#0000CD"><strong>Regulatory networks</strong></span></p> <p>-Signal transduction and transcriptional control</p> <p>-Structures of regulatory networks</p> <p><span style="color:#0000FF"><strong>Dynamics , stability , and robustness</strong></span></p> <p>-Robustness through redundancy</p> <p>-Dynamic modelling</p> <p><span style="color:#0000CD"><strong>Protein interaction networks</strong></span></p> <p>-Structural biology of regulatory networks</p> <p><span style="color:#0000CD"><strong>Protein-DNA interactions</strong></span></p> <p>-Structural themes in protein-DNA binding and sequence recognition</p> <p>-An album of transcription regulators</p> <p><span style="color:#0000CD"><strong>Gene regulation&nbsp;</strong></span></p> <p>-The transcriptional regulatory network of Escherichia coli</p> <p>-Regulation of the lactose operon in E.Coli.</p> <p><span style="color:#0000CD"><strong>The genetic regulatory network od Saccharomyces cerevisiae</strong></span></p> <p>-Adaprability of the yeast regulatory network.</p> <p>&nbsp;[[HW_S]]</p>