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<p><span style="font-size:20px"><strong>Jong Bhak's Bioinformatics homework </strong></span><span style="font-size:18px"><strong>(for any bioinforamtics students)</strong></span></p>
<p> </p> <p><span style="font-size:18px"><strong>1. Learn [[Perl]] programming languageand learn bioinformatics using it.</strong></span></p>
<ul>
<li><span style="font-size:16px">[[Install and Learn BioPerl]]</span></li>
<li><span style="font-size:16px">[[Make a Perl program translating 'all' combinations of triple bases into amino acids]]</span></li>
<li><span style="font-size:16px">[[Make a Perl program to calculate the lengths of DNA and protein sequences]]</span></li>
<li><span style="font-size:16px">[[Make a Perl program to calculate the length of a Mycoplasma genitalium bacterium]]</span></li>
<li><span style="font-size:16px">[[Pick 5 protein sequences and predict their secondary structures using available prediction programs]]</span></li>
<li><span style="font-size:16px">[[Open and re-write one FASTA file containing one protein sequence of TERT]]</span></li>
<li><span style="font-size:16px">[[Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file]]</span></li> <li><span style="font-size:16px">[[Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file]] </span></li> <li><span style="font-size:16px">[[In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc]]</span></li> <li><span style="font-size:16px">[[Align two protein sequences using a dynamic programming method in Perl]]</span></li> <li><span style="font-size:16px">[[Randomly generate five 100 AA long protein sequences and store them in a FASTA file]]</span></li> <li><span style="font-size:16px">[[Create a flat text file database of protein sequences with hash function in Perl]]</span></li></ul> <p> </p> <p> </p> <p><span style="font-size:18px"><strong>2. Learn various bioinformatics program and tasks</strong></span></p> <ul> <li>[[Access http://koreanreference.org/home/index.html and search for TERT_HUMAN DNA region]]</li> <li><span style="font-size:16px">[[Install a sequence alignment viewer program on your computer]]</span></li> <li><span style="font-size:16px">[[Install a protein 3D structure viewer program on your computer]]</span></li> <li><span style="font-size:16px">[[Create a MySQL database and Learn BioPerladd 5 protein sequences in your MySQL DB]]</span></li> <li>[[Download TERT_HUMAN sequence and search for 3D structure of it and build a 3D model using bat's TERT homolog sequence using the human 3D template]]</li> <li>[[Access http://string-db.org/ and find all the interaction partners of TERT_HUMAN protein]]</li> <li>[[How to use NCBI database to construct a protein sequence]]</li>
</ul>
<p> </p> <p><span style="font-size:18px"><strong>23. Watch the following YouTube lectures;</strong></span></p>
<p><span style="font-size:16px"> </span><span style="font-size:14px">MIT 생정보연구자들의 시리즈</span></p>