<p><span style="font-size:18px20px"><strong>Jong Bhak&#39;s Bioinformatics homework</strong></span><span style="font-size:18px"><strong>(for any bioinforamtics students)</strong></span></p>

<p>1. Learn Perl programming language&nbsp;</p>

<p>2<span style="font-size:18px"><strong>1. Watch the following YouTube lectures;Learn [[Perl]] programming language and learn bioinformatics using it.</strong></span></p>

<pul> <li><span style="font-size:16px">[[Install and Learn BioPerl]]</span></li> <li><span style="font-size:16px">[[Make a Perl program translating &nbsp#39; all&nbsp#39;combinations of triple bases into amino acids]]</span></li> <li><span style="font-size:16px">[[Make a Perl program to calculate the lengths of DNA and protein sequences]]</span></li> <li><span style="font-size:16px">[[Make a Perl program to calculate the length of a Mycoplasma genitalium bacterium]]</span></li> <li><span style="font-size:16px">[[httpsPick 5 protein sequences and predict their secondary structures using available prediction programs]]</span></li> <li><span style="font-size:16px">[[Open and re-write one FASTA file containing one protein sequence of TERT]]</span></wwwli> <li><span style="font-size:16px">[[Create a FASTA file with a sequence.youtube.comOpen it and reverse the sequence of it and print it out in another FASTA file]]</span></watch?vli> <li><span style=6Udqou3vmng Chris Burge&#39;s local alignment lecture "font-size:16px">[[Extract a sequence MKKTGIKG from MITASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file]] </span></li> <li><span style="font-size:16px">[[In a multi-sequence FASTA file, produce statistics&nbsp;&nbsp;such as sequence number, average seq length, GC content, AT content, etc]]</span></li> <li><span style="font-size:16px">[[Align two protein sequences using a dynamic programming method in Perl]]</span></li> <li><span style="font-size:16px">[[Randomly generate five 100 AA long protein sequences and store them in a FASTA file]]</span></li> <li><span style="font-size:16px">[[Create a flat text file database of protein sequences with hash function in Perl]]</span></li></pul>

<p>&nbsp;</p> <p>&nbsp;</p> <p><span style="font-size:18px"><strong>2. Learn various bioinformatics program and tasks</strong></span></p> <ul> <li>[[Access&nbsp;http://koreanreference.org/home/index.html and search for TERT_HUMAN DNA region]]</li> <li><span style="font-size:16px">[[Install a sequence alignment viewer program on your computer]]</span></li> <li><span style="font-size:16px">[[Install a protein 3D structure viewer program on your computer]]</span></li> <li><span style="font-size:16px">[[Create a MySQL database and add 5 protein sequences in your MySQL DB]]</span></li> <li>[[Download TERT_HUMAN sequence and search for 3D structure of it and build a 3D model using bat&#39;s TERT homolog sequence using the human 3D template]]</li> <li>[[Access http://string-db.org/&nbsp; and find all the interaction partners of TERT_HUMAN protein]]</li> <li>[[How to use NCBI database to construct a protein sequence]]</li></ul> <p>&nbsp;</p> <p><span style="font-size:18px"><strong>3. Watch the following YouTube lectures;</strong></span></p> <p><span style="font-size:16px">&nbsp; &nbsp;</span><span style="font-size:14px">MIT 생정보연구자들의 시리즈</span></p> <p><span style="font-size:14px">&nbsp; &nbsp;[https://www.youtube.com/watch?v=lJzybEXmIj0 MIT Bioinforamtics intro] </span></p> <p><span style="font-size:14px">&nbsp; &nbsp;[https://www.youtube.com/watch?v=6Udqou3vmng Chris Burge&#39;s local alignment lecture from MIT] &nbsp;&nbsp;</span></p> <p><span style="font-size:14px">&nbsp; &nbsp;[https://www.youtube.com/watch?v=PdyARRNwi7I&nbsp;Chris Burge&#39;s alignment lecture from MIT]</span></p> <p><span style="font-size:14px">&nbsp; &nbsp;[https://www.youtube.com/watch?v=ZYW2AeDE6wU Genome Assembly from MIT]</span></p> <p><span style="font-size:14px">&nbsp; &nbsp;[https://www.youtube.com/watch?v=P3ORBMon8aw David Gifford MIT&nbsp;Library Complexity and Short Read Alignment]</span></p> <p><span style="font-size:14px">&nbsp; &nbsp;[https://www.youtube.com/watch?v=Ob9xGBPvr_s Chip-seq analyses + DNA protein interaction from MIT]</span></p> <p><span style="font-size:14px">&nbsp; &nbsp;[https://www.youtube.com/watch?v=MniYgsZSp30 &nbsp;RNA-seq analyses by MIT David Gifford]</span></p> <p><span style="font-size:14px">&nbsp; &nbsp;[https://www.youtube.com/watch?v=1EMonM7qAU8 Modelling and discovery of sequence motifs by MIT]</span></p> <p><span style="font-size:14px">&nbsp; &nbsp;[https://www.youtube.com/watch?v=d5NMrA2HkG4 Markov and Hidden Markov models for genome and protein sequence features]</span></p> <p><span style="font-size:14px">&nbsp; &nbsp;[https://www.youtube.com/watch?v=kUN6rJ21Hno RNA-sequence secondary structures by MIT]</span></p> <p><span style="font-size:14px">&nbsp; &nbsp;[https://www.youtube.com/watch?v=6ROBp57G2ZI Intro to protein structure and comparisons]</span></p> <p><span style="font-size:14px">&nbsp; &nbsp;[https://www.youtube.com/watch?v=j1s9JfZKFqU Predicting protein structure from MIT]</span></p> <p><span style="font-size:14px">&nbsp; &nbsp;[https://www.youtube.com/watch?v=C95294_vvQY Predicting protein-protein interactions]</span></p> <p><span style="font-size:14px">&nbsp; &nbsp;[https://www.youtube.com/watch?v=So6MK_FcP4E Gene regulartory networks by MIT]</span></p> <p><span style="font-size:14px">&nbsp; &nbsp;[https://www.youtube.com/watch?v=RBPcKbEvK3U Protein interaction networks by MIT]</span></p> <p><span style="font-size:14px">&nbsp; &nbsp;[https://www.youtube.com/watch?v=i59JDQ9hk10 Logic modeling of cell signalling networks by MIT]</span></p> <p><span style="font-size:14px">&nbsp; &nbsp;[https://www.youtube.com/watch?v=iKLvCuFD1MA Analysis of chromatic structure by MIT]</span></p> <p><span style="font-size:14px">&nbsp; &nbsp;[https://www.youtube.com/watch?v=kx_Hks_-SZM Discoverying quantitative trait loci by MIT]</span></p> <p><span style="font-size:14px">&nbsp; &nbsp;[https://www.youtube.com/watch?v=KYQ2dPW5nEU Human genetics SNPs, GWAS by MIT]</span></p> <p><span style="font-size:14px">&nbsp; &nbsp;[https://www.youtube.com/watch?v=kKyrR0cFrEg Synthetic biology by MIT]</span></p> <p><span style="font-size:14px">&nbsp; &nbsp;[https://www.youtube.com/watch?v=uD4-fOWeXAY Causality, Natural language and genome engineering]</span></p> <p><span style="font-size:14px">&nbsp; &nbsp;[https://www.youtube.com/watch?v=0E0a5ZaE6Gk George Church&#39;s future of genomics and synthetic biology]</span></p> <p><span style="font-size:14px">&nbsp; &nbsp;[https://www.youtube.com/watch?v=SuAxDVBt7kQ Genome Engineering by Jennifer Doudnaby UC Berkeley] 제니퍼 다우드나의 강의</span></p> <p>&nbsp;</p> <hr /><p>[http://biolecture.org/index.php/UNIST_Bioinformatics_course UNIST Bioinformatics course]</p> <p>[http://bioinformatics.ws 생정보학 전반에 대한 온라인 홈페이지]</p>