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Created page with " <span style="font-size:22px;">Jong Bhak's 2021 Genomics Lecture videos. All on this page.</span> ---- UNIST Genomics course 2021 | ..."
<span style="font-size:22px;">Jong Bhak's 2021 Genomics Lecture videos. All on this page.</span>
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[[UNIST_Genomics_course_2021|UNIST Genomics course 2021]] | [[Jong_Bhak's_Genomics_Syllabus|Jong Bhak's Genomics Syllabus]]
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<br/> <span style="font-size:16px;">'''[[Genomics_intro|Genomics intro]]''': [https://youtu.be/kflrpWKjGBU https://youtu.be/kflrpWKjGBU] <img style="width: 140px; height: 79px;" src=http://Biolecture.org/upload/20210228145053_20210228_142708.png></span>
*<span style="font-size:16px;">What is Science? [https://www.youtube.com/watch?v=LJJoKxDsyoQ Asking Questions and Defining Problems - YouTube]</span>
*<span style="font-size:16px;">What is life? [https://www.youtube.com/watch?v=hS6PDOcJwY8 What is life"-lecture: Denis Noble - YouTube]</span>
*<span style="font-size:16px;">What is information: </span>[https://www.youtube.com/watch?v=qj7HH0PCqIE The Power And Story Of Information | Order and Disorder | Spark - YouTube]
*<span style="font-size:16px;">What is DNA? [https://www.youtube.com/watch?v=q6PP-C4udkA What is DNA? - YouTube]</span>
*<span style="font-size:16px;">What is DNA replication? [https://www.youtube.com/watch?v=FBmO_rmXxIw DNA Replication - YouTube]</span>
*<span style="font-size:16px;">What is a genome? [https://www.youtube.com/watch?v=zMgmI_L1ZY8 What is a genome? - YouTube] (British)</span>
*<span style="font-size:16px;">What is a chromosome? [https://www.youtube.com/watch?v=tsVHWbXqum8 What are Chromosomes? - YouTube]</span>
*<span style="font-size:16px;">How DNA was discovered and DNA structure? [https://www.youtube.com/watch?v=qoERVSWKmGk DNA and RNA - Part 1 - YouTube]</span>
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<span style="font-size:16px;">'''[[Genome_''''''sequencing|Genome '''sequencing''']]: Try to understand what a string/sequence is. How do we sequence DNA, RNA, and Proteins?'''</span>
*<span style="font-size:16px;">'''[[Sanger_genome_sequencing|Sanger genome sequencing]]''': [https://www.youtube.com/watch?v=FvHRio1yyhQ The Sanger Method of DNA Sequencing - YouTube] | [https://www.youtube.com/watch?v=-QIMkQ4E_wE How Sanger Sequencing Works? (Classic Sanger Method) - YouTube]</span>
*What is a string and a [[Sequence|sequence]]?
*<span style="font-size:16px;">What is a protein? [https://www.youtube.com/watch?v=wvTv8TqWC48 What is a Protein? (from PDB-101) - YouTube]</span>
*<span style="font-size:16px;">Protein sequencing as a comparison[https://www.youtube.com/watch?v=2F57xjy19fk Proteins! - Amino Acid Sequencing Explained - YouTube]</span>
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[[Next_Generation_Sequencing|Next Generation Sequencing]]: Learn what NGS is.
*[https://www.youtube.com/watch?v=GZejHrnWUXg NGS(차세대 유전체 해독 기술) - YouTube] by GRF. Korean.
*<span style="font-size:16px;">What is Next Generation Sequencing? [https://www.youtube.com/watch?v=jFCD8Q6qSTM Next Generation Sequencing (NGS) - An Introduction - YouTube]</span>
*<span style="font-size:16px;"> * Long lecture: </span>[https://www.youtube.com/watch?v=v1DbcJD4Ry0 Next-Generation Sequencing Technologies (2016) - Elaine Mardis - YouTube]
*'''Illumina '''NGS sequencing [https://www.youtube.com/watch?v=fCd6B5HRaZ8 Illumina Sequencing by Synthesis - YouTube]
*'''Nanoball '''NGS sequencing by MGI(Complete genomics): [https://www.youtube.com/watch?v=RGcpftDHpng Nanoball Sequencing - YouTube]
*Sample preparation: [https://www.youtube.com/watch?v=PFwSe09dJX0 Next Generation Sequencing 2: Illumina NGS Sample Preparation - Eric Chow (UCSF) - YouTube ]<img style="width: 48px; height: 32px;" src=http://Biolecture.org/upload/20210228164304_image.png>
*'''[[Nanopore_''''''sequencing|Nanopore ''''''sequencing''''']]''': [https://www.youtube.com/watch?v=RcP85JHLmnI How nanopore sequencing works - YouTube] (short)
* * [https://www.youtube.com/watch?v=E9-Rm5AoZGw Nanopore DNA sequencing - YouTube] (longer)
*RNA-seq: [https://www.youtube.com/watch?v=8lAVfKbRK3I The Beginner's Guide to RNA-Seq - #ResearchersAtWork Webinar Series - YouTube]
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'''[[Epigenomics|Epigenomics]] lecture: Learn what epigenetic effect is in biology. How can environment affect genes directly?'''
*[https://www.youtube.com/watch?v=i9a-ru2ES6Y Epigenetics - YouTube]
*[https://www.youtube.com/watch?v=IAu44BkOaSs Introduction to epigenetics - YouTube] <img style="width: 148px; height: 40px;" src=http://Biolecture.org/upload/20210301024927_image.png>
*[https://www.youtube.com/watch?v=0dOFztY3VJY EPIGENETICS & CHROMATIN STATES - An introduction to histone modifications & gene transcription roles - YouTube]
**Contents: [https://www.youtube.com/watch?v=0dOFztY3VJY&t=35s 0:35] Defining the epigenetic memory of gene expression [https://www.youtube.com/watch?v=0dOFztY3VJY&t=157s 2:37] Chromatin and histones [https://www.youtube.com/watch?v=0dOFztY3VJY&t=432s 7:12] Histone modifications [https://www.youtube.com/watch?v=0dOFztY3VJY&t=479s 7:59] Histone acetylation and reading by bromodomain proteins [https://www.youtube.com/watch?v=0dOFztY3VJY&t=722s 12:02] Histone methylation and reading by chromodomain proteins [https://www.youtube.com/watch?v=0dOFztY3VJY&t=1157s 19:17] The complex language of histone modifications [https://www.youtube.com/watch?v=0dOFztY3VJY&t=1313s 21:53] How a core set of marks help define chromatin states
*''' * '''[https://www.youtube.com/watch?v=wDjLQk3hvFk Howard Chang (Stanford, HHMI) 1: Epigenomic Technologies - YouTube]
* * [https://www.youtube.com/watch?v=_aAhcNjmvhc What is epigenetics? - Carlos Guerrero-Bosagna - YouTube]
*'''[[Epigenetic_''''''sequencing|Epigenetic ''''''sequencing''''']] '''(methylation sequencing): [https://www.youtube.com/watch?v=OcIazFGQv0g Bisulfite Sequencing - detect DNA Methylation - YouTube]
* * [https://www.youtube.com/watch?v=2X0Fm1KEWUE Peter Laird: Epigenetics, DNA Methylation, and Arrays - YouTube]
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[['''Sequence_''''''alignment|'''Sequence ''''''alignment'']]''': Sequence alignment algorithms. How computers can align DNA?'''
*'''[https://www.youtube.com/watch?v=OSKwuOccAak Comparing DNA Sequences - YouTube]'''
*[https://www.youtube.com/watch?v=aPQY__2H3tE 5 Simple Steps for Solving Dynamic Programming Problems - YouTube]
*'''* [https://www.youtube.com/watch?v=oBt53YbR9Kk Dynamic Programming - Learn to Solve Algorithmic Problems & Coding Challenges - YouTube]'''
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'''[[Computers_for_genomics|Computers for genomics]]''': Understand how computers work. Computing is something special. Life is a kind of computing.
*[https://www.youtube.com/watch?v=ExxFxD4OSZ0 What does what in your computer? Computer parts Explained - YouTube]
*[https://www.youtube.com/watch?v=gtRLmL70TH0 Alan Turing - Celebrating the life of a genius - YouTube]
*[https://www.youtube.com/watch?v=dNRDvLACg5Q Turing Machines Explained - Computerphile - YouTube]
*[https://www.youtube.com/watch?v=gJQTFhkhwPA Turing Machines - YouTube]
*Real physical machine: [https://www.youtube.com/watch?v=E3keLeMwfHY A Turing Machine - Overview - YouTube ]
*[https://www.youtube.com/watch?v=WgEsPTAL55Q Regular Grammar - YouTube]
*[https://www.youtube.com/watch?v=I6K-QuE87NM Definition: Context-Free Grammars - YouTube]
*[https://www.youtube.com/watch?v=pJ607nDnyE0 Linux Explained in 2020: Just What is The Linux Kernel?! - YouTube]
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'''[[Genome_Assembly|Genome Assembly]]: Assembling a genome from short and long sequence data.'''
*Lecture[https://www.youtube.com/watch?v=5wvGapmA5zM Fundamentals of Genome Assembly - YouTube]
*[https://www.youtube.com/watch?v=KASvlXYPCBI An overview of DNA sequence assembly - YouTube] by Rob Edwards
*[https://www.youtube.com/watch?v=sseqEefj6Gs Naive DNA sequence assembly - YouTube] by Rob Edwards
*[https://www.youtube.com/watch?v=VNKWrEqg60Y Genome Assembly - YouTube] by Sacan
*Nanopore long reads assembly [https://www.youtube.com/watch?v=Zug8FonO8Vo Nanopore Sequencing Technology and Tools for Genome Assembly - Damla Senol Cali - AACBB 2019 Talk - YouTube]
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'''[[Phylogenetic_tree|Phylogenetic tree]]''' (tree of life): Phylo tree is a bad but useful tool to understand genes and genomes.
*[[The_origin_of_Korean_people_using_genome_data|The origin of Korean people using genome data]]
*[https://www.youtube.com/watch?v=fQwI90bkJl4 Phylogenetics - YouTube]
*[https://www.youtube.com/watch?v=09eD4A_HxVQ Creating a Phylogenetic Tree - YouTube]
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'''[[Comparative_Genomics|Comparative Genomics]]: H'''ow we can compare life using genomes.
*[https://www.youtube.com/watch?v=Irs65GAu1YM What is Comparative Genomics? - YouTube]
*[https://www.youtube.com/watch?v=U5CHfCIOPGI Perspectives in Comparative Genomics and Evolution - YouTube]
*[https://www.youtube.com/watch?v=FgakZw6K1QQ Principal Component Analysis (PCA), Step-by-Step - YouTube]
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'''[[Evolution|Evolution]]''' (genome perspective):
*[https://www.youtube.com/watch?v=S1t5_iGN0xE Evolution vs Natural Selection - YouTube]
*[https://www.youtube.com/watch?v=JOk_0mUT_JU Theory of Evolution: How did Darwin come up with it? - BBC News - YouTube]
*[https://www.youtube.com/watch?v=kNPbjtej1Hk Evolution - What Darwin Never Knew - NOVA Full Documentary HD - YouTube]
*[[Is_Darwinian_evolution_correct?|Is Darwinian evolution correct?]]
** [https://www.youtube.com/watch?v=qYWsvtL16_k Is evolution wrong? | Massimo Pigliucci, Zanna Clay, Tim Lewens - YouTube]
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'''[[The_human_genome_project|The human genome project]]'''
*[https://www.youtube.com/watch?v=FCzcPSMz1tA CARTA: DNA–Neandertal and Denisovan Genomes;Neandertal Genes in Humans;Neandertal Interbreeding - YouTube]
*[https://www.youtube.com/watch?v=qOW5e4BgEa4 Lessons from the Human Genome Project - YouTube]
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'''[[Korean_genome_project|Korean genome project]]: [[Who_are_Koreans?|Who are Koreans?]]'''
*[https://www.youtube.com/watch?v=tK2KCmeOT8o 게놈분석 통한 한국인 기원과 이동 동영상 - YouTube]
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'''[[Whale_genome_analysis|Whale genome analysis]]''' and '''[[Whale_shark_genome_analysis|whale shark genome analysis]]'''
*
** [https://www.youtube.com/watch?v=ZVXRrzMF530 100살 사는 고래상어 게놈 분석…장수 비결 실마리 / YTN 사이언스 - YouTube]
** [https://www.youtube.com/watch?v=7cJnnUF2XhE The Evolutionary History of Whales - Cetacean Evolution Part 1 - YouTube]
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'''[[Tiger_genome_analyses|Tiger genome analyses]]'''
*
** [https://www.youtube.com/watch?v=EkSwjuN_t9k tiger genome project-PGI - YouTube]
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'''[[Cancer_genomes|Cancer genomes]] '''
*'''* '''[https://www.youtube.com/watch?v=W-S84J4zK9E DNA Methylation and Cancer - Garvan Institute - YouTube]
<br/> '''[[Genomes_and_aging|Genomes and aging]] ([[Telomere|telomere]])'''
*
** [https://www.youtube.com/watch?v=Ker58CPjDJs DNA Methylation | Stop DNA From Aging With TMG? - YouTube]
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<span style="font-size:16px;">[[UNIST_Genomics_course_2021|<img style="null" src=http://biolecture.org/extensions/WYSIWYG/ckeditor/plugins/smiley/images/lightbulb.png>UNIST Genomics course 2021]] | [[Jong_Bhak's_Genomics_Syllabus|Jong Bhak's Genomics Syllabus]] | [[Genomics_2021_Homework|Genomics 2021 Homework]]</span>