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Bioinformatics homework

13 bytes added, 09:29, 14 May 2016
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<li><span style="font-size:16px">[[Pick 5 protein sequences and predict their secondary structures using available prediction programs]]</span></li>
<li><span style="font-size:16px">[[Open and re-write one FASTA file containing one protein sequence of TERT]]</span></li>
<li><span style="font-size:16px">[[Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file]]</span></li>
<li><span style="font-size:16px">[[Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file]] </span></li>
<li><span style="font-size:16px">[[In a multi-sequence FASTA file, produce statistics&nbsp;such as sequence number, average seq length, GC content, AT content, etc]]</span></li>
<li><span style="font-size:16px">[[Align two protein sequences using a dynamic programming method in Perl]]</span></li>
<li><span style="font-size:16px">[[Randomly generate five 100 AA long protein sequences and store them in a FASTA file]]</span></li>
<li><span style="font-size:16px">[[Create a flat text file database of protein sequences with hash function in Perl]]</span></li>
</ul>
 
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<ul>
<li><span style="font-size:16px">[[Install a sequence alignment viewer program on your computer]]</span></li>
<li><span style="font-size:16px">[[Install a protein 3D structure viewer program on your computer]]</span></li> <li><span style="font-size:16px">[[Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file]]</span></li> <li><span style="font-size:16px">[[Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file]] </span></li> <li><span style="font-size:16px">[[In a multi-sequence FASTA file, produce statistics&nbsp;such as sequence number, average seq length, GC content, AT content, etc]]</span></li> <li><span style="font-size:16px">[[Align two protein sequences using a dynamic programming method in Perl]]</span></li> <li><span style="font-size:16px">[[Randomly generate five 100 AA long protein sequences and store them in a FASTA file]]</span></li> <li><span style="font-size:16px">[[Create a flat text file database of protein sequences with hash function in Perl]]</span></li>
<li><span style="font-size:16px">[[Create a MySQL database and add 5 protein sequences in your MySQL DB]]</span></li>
<li>[[Download TERT_HUMAN sequence and search for 3D structure of it and build a 3D model using bat&#39;s TERT homolog sequence using the human 3D template]]</li>
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