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Part 1: Molecular Biology Search and Analysis

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<a href="http://www.embl-heidelberg.de/srs/srsc?-info||ALI"><strong>[[3D-ALI</strong></a> ]] - Database relating Proteins Structures and Sequences (see <a href="gopher://s-crim1.dl.ac.uk/00/EMBnet%20Bioinformation%20Resource%20UK/Data%20%26%20Software/databases/3d_ali/3d_ali.doc"><strong>Documentation</strong></a>) at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a>&nbsp; <br />
&nbsp;<a href="http://www.embl-heidelberg.de/aaa.html"><strong>AA Analysis</strong>&nbsp;</a> - Protein Identification in SwissProt and PIR using Amino Acid Composition at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a>&nbsp;&nbsp;<br />
&nbsp;<a href="http://expasy.hcuge.ch/ch2d/aacompi.html"><strong>AA CompIdent</strong></a> - Protein Identification in SwissProt using Amino Acid Composition at <a href="http://expasy.hcuge.ch/">ExPASy</a>, Switzerland&nbsp;&nbsp;<br />
&nbsp;<a href="http://mips11.mips.biochem.mpg.de/www/programs/atlas_per.html"><strong>ATLAS</strong></a> - Search DNA and Protein Sequence Databases at <a href="http://speedy.mips.biochem.mpg.de/">MIPS</a>, Germany&nbsp;&nbsp;<br />
&nbsp;<a href="http://kiwi.imgen.bcm.tmc.edu:8088/search-launcher/launcher.html"><strong>BCM Search Launcher</strong></a> at&nbsp;<br />
<a images="" alt="(W3)" images="" href="http://www.bcm.tmc.edu/%3EBaylor%20College%20of%20Medicine%3C/a%3E%20%3Cimg%20src=">&nbsp;</a><a href="http://dot.imgen.bcm.tmc.edu:9331/seq-search/protein-search.html"><strong>BEAUTY</strong></a> - BLAST Enhanced Alignment Utility <a href="http://dot.imgen.bcm.tmc.edu:9331/seq-search/Help/beauty.html"><strong>(see Documentation)</strong></a> at <a href="http://www.bcm.tmc.edu/">Baylor College of Medicine</a>&nbsp; <br />
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&nbsp;<a href="http://cammsg3.caos.kun.nl:8000/srs/srsc?-info+BERLIN"><strong>BERLIN</strong></a> - RNA Databank of 5S rRNA and 5S rRNA Gene Sequences at <a href="http://cammsg3.caos.kun.nl:8000/">CAOS/CAMM</a>, The Netherlands&nbsp; <br />
&nbsp;<a href="http://sgbcd.weizmann.ac.il/Bic/ExecAppl.html"><strong>BIOACCELERATOR</strong></a> at <a href="http://bioinformatics.weizmann.ac.il:70/">Weizmann Institute of Science</a>, Israel&nbsp; <br />
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&nbsp;<a images="" alt="!New!" images="" href="http://www.ocms.ox.ac.uk/~birney/cusi/biocusi.html%3E%3Cb%3EbioCUSI%3C/b%3E%3C/a%3E%3Cimg%20src=">- Multiple Access to Biological Servers at </a><a href="http://www.ocms.ox.ac.uk/">OCMS-Oxford</a>&nbsp; <br />
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&nbsp;<a href="ftp://pdb.pdb.bnl.gov/user_group/biological_units"><strong>Biological Units</strong></a> - Expanded PDB Entries with Full Biological Units at <a href="http://suntid.bnl.gov:8080/bnl.html">Brookhaven National Laboratory</a>&nbsp; <br />
&nbsp;<a href="http://ncbi.nlm.nih.gov:2555/r_genbank2.html"><strong>GenBank Database</strong></a> (+Updates) at <a href="http://www.ncbi.nlm.nih.gov/">NCBI</a> and <a href="http://ibc.wustl.edu/wu_fetch.html"><strong>GenBank-Fetch</strong></a> at <a href="http://ibc.wustl.edu/">Washington U.</a>&nbsp; <br />
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&nbsp;<a href="http://dot.imgen.bcm.tmc.edu:9331/gene-finder/gf.html"><strong>Gene Finder</strong></a> - Predict Gene Structure, Internal Exons and Splicing Sites in DNA and Exon-Exon Junstion in cDNA at <a images="" alt="(W3)" images="" href="http://www.bcm.tmc.edu/%3EBaylor%20College%20of%20Medicine%3C/a%3E%20%3Cimg%20src="></a><br />
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<a images="" alt="(W3)" images="" href="http://www.bcm.tmc.edu/%3EBaylor%20College%20of%20Medicine%3C/a%3E%20%3Cimg%20src=">&nbsp;</a><a href="http://cbil.humgen.upenn.edu/~sdong/genlang_home.html"><strong>GenLang</strong></a> - Find Genes and Other Higher-Order Features in Nucleotide Sequences at <a href="http://cbil.humgen.upenn.edu/">CBIL-U. Pennsylvania</a>&nbsp; <br />
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&nbsp;<a href="http://specter.dcrt.nih.gov:8004/"><strong>GenoBase</strong></a> at <a href="http://www.nih.gov/">NIH</a>&nbsp; <br />
&nbsp;<a href="http://psort.nibb.ac.jp/"><strong>PSORT</strong></a> - Predict Protein Sorting Signals Coded in Amino Acid Sequences at <a href="http://www.genome.ad.jp/">GenomeNet</a>, Japan&nbsp; <br />
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&nbsp;<a href="http://dot.imgen.bcm.tmc.edu:9331/pssprediction/pssp.html"><strong>PSSP</strong></a> - Protein Secondary Structure Prediction at <a images="" alt="(W3)" images="" href="http://www.bcm.tmc.edu/%3EBaylor%20College%20of%20Medicine%3C/a%3E%20%3Cimg%20src="></a><br />
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<a images="" alt="(W3)" images="" href="http://www.bcm.tmc.edu/%3EBaylor%20College%20of%20Medicine%3C/a%3E%20%3Cimg%20src=">&nbsp;</a><a href="http://www.mcs.anl.gov/home/compbio/PUMA/Production/puma.html"><strong>PUMA</strong></a> - Phylogeny of Unicellular Organims with Metabolism and Alignments from <a href="http://www.mcs.anl.gov/home/compbio/default.html">MCS-Computational Biology</a> at <a href="http://www.anl.gov/">Argonne National Laboratory</a>&nbsp; <br />
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&nbsp;<a href="file://ftp.embl-heidelberg.de/pub/databases/protein_extras/puu/domains.puu"><strong>PUU</strong></a> - Protein Domains Database Based on PDB-Select at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a>&nbsp; <br />
&nbsp;<a href="http://www.bio.cam.ac.uk/scop/"><strong>SCOP</strong></a> - Structural Classification of Proteins at <a href="http://www.bio.cam.ac.uk/">Cambridge</a>, UK and <a href="http://www.nick.med.usf.edu/scop/index.html"><strong>SCOP</strong></a> at <a href="http://www.nick.med.usf.edu/">U. South Florida</a>&nbsp; <br />
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&nbsp;<a href="http://dot.imgen.bcm.tmc.edu:9331/seq-annot/home.html"><strong>Sequence Annotation</strong></a> - Annotations on NCBI Sequences at <a images="" alt="(W3)" images="" href="http://www.bcm.tmc.edu/%3EBaylor%20College%20of%20Medicine%3C/a%3E%20%3Cimg%20src="></a><br />
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<a images="" alt="(W3)" images="" href="http://www.bcm.tmc.edu/%3EBaylor%20College%20of%20Medicine%3C/a%3E%20%3Cimg%20src=">&nbsp;</a><a href="http://alces.med.umn.edu/rawtrans.html"><strong>Sequence Translation</strong></a> - Translate Gene Sequences at <a href="http://www.umn.edu/">U. Minnesota</a>&nbsp; <br />
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&nbsp;<a href="ftp://dasher.wustl.edu/pub/sleuth/data"><strong>Sleuth</strong></a> - Amino Acid Conformation and Solvent Accessibility of PDB Files at <a href="http://ibc.wustl.edu/">Washington U.</a>&nbsp; <br />

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