Difference between revisions of "All the videos for Genomics 2021 in one big page"
From Biolecture.org
| (10 intermediate revisions by the same user not shown) | |||
| Line 10: | Line 10: | ||
<br/> <span style="font-size:16px;">'''[[Genomics_intro|Genomics intro]]''': [https://youtu.be/kflrpWKjGBU https://youtu.be/kflrpWKjGBU] <img style="width: 140px; height: 79px;" src=http://Biolecture.org/upload/20210228145053_20210228_142708.png></span> | <br/> <span style="font-size:16px;">'''[[Genomics_intro|Genomics intro]]''': [https://youtu.be/kflrpWKjGBU https://youtu.be/kflrpWKjGBU] <img style="width: 140px; height: 79px;" src=http://Biolecture.org/upload/20210228145053_20210228_142708.png></span> | ||
| − | *What is Science? [https://www.youtube.com/watch?v=LJJoKxDsyoQ Asking Questions and Defining Problems - YouTube] | + | *<span style="font-size:16px;">What is Science? [https://www.youtube.com/watch?v=LJJoKxDsyoQ Asking Questions and Defining Problems - YouTube]</span> |
*<span style="font-size:16px;">What is life? [https://www.youtube.com/watch?v=hS6PDOcJwY8 What is life"-lecture: Denis Noble - YouTube]</span> | *<span style="font-size:16px;">What is life? [https://www.youtube.com/watch?v=hS6PDOcJwY8 What is life"-lecture: Denis Noble - YouTube]</span> | ||
| + | *<span style="font-size:16px;">What is information: </span>[https://www.youtube.com/watch?v=qj7HH0PCqIE The Power And Story Of Information | Order and Disorder | Spark - YouTube] | ||
*<span style="font-size:16px;">What is DNA? [https://www.youtube.com/watch?v=q6PP-C4udkA What is DNA? - YouTube]</span> | *<span style="font-size:16px;">What is DNA? [https://www.youtube.com/watch?v=q6PP-C4udkA What is DNA? - YouTube]</span> | ||
*<span style="font-size:16px;">What is DNA replication? [https://www.youtube.com/watch?v=FBmO_rmXxIw DNA Replication - YouTube]</span> | *<span style="font-size:16px;">What is DNA replication? [https://www.youtube.com/watch?v=FBmO_rmXxIw DNA Replication - YouTube]</span> | ||
| Line 20: | Line 21: | ||
---- | ---- | ||
| − | <span style="font-size:16px;">'''[[Genome_''''''sequencing|Genome '''sequencing''']]''' | + | <span style="font-size:16px;">'''[[Genome_''''''sequencing|Genome '''sequencing''']]: Try to understand what a string/sequence is. How do we sequence DNA, RNA, and Proteins?'''</span> |
| − | *<span style="font-size:16px;">'''[[Sanger_genome_sequencing|Sanger genome sequencing]]''': | + | *<span style="font-size:16px;">'''[[Sanger_genome_sequencing|Sanger genome sequencing]]''': [https://www.youtube.com/watch?v=FvHRio1yyhQ The Sanger Method of DNA Sequencing - YouTube] | [https://www.youtube.com/watch?v=-QIMkQ4E_wE How Sanger Sequencing Works? (Classic Sanger Method) - YouTube]</span> |
| − | *What is a protein? [https://www.youtube.com/watch?v=wvTv8TqWC48 What is a Protein? (from PDB-101) - YouTube] | + | *What is a string and a [[Sequence|sequence]]? |
| − | *Protein sequencing as a comparison[https://www.youtube.com/watch?v=2F57xjy19fk Proteins! - Amino Acid Sequencing Explained - YouTube] | + | *<span style="font-size:16px;">What is a protein? [https://www.youtube.com/watch?v=wvTv8TqWC48 What is a Protein? (from PDB-101) - YouTube]</span> |
| + | *<span style="font-size:16px;">Protein sequencing as a comparison[https://www.youtube.com/watch?v=2F57xjy19fk Proteins! - Amino Acid Sequencing Explained - YouTube]</span> | ||
---- | ---- | ||
| − | [[Next_Generation_Sequencing|Next Generation Sequencing]]: | + | [[Next_Generation_Sequencing|Next Generation Sequencing]]: Learn what NGS is. |
| + | *[https://www.youtube.com/watch?v=GZejHrnWUXg NGS(차세대 유전체 해독 기술) - YouTube] by GRF. Korean. | ||
*<span style="font-size:16px;">What is Next Generation Sequencing? [https://www.youtube.com/watch?v=jFCD8Q6qSTM Next Generation Sequencing (NGS) - An Introduction - YouTube]</span> | *<span style="font-size:16px;">What is Next Generation Sequencing? [https://www.youtube.com/watch?v=jFCD8Q6qSTM Next Generation Sequencing (NGS) - An Introduction - YouTube]</span> | ||
*<span style="font-size:16px;"> * Long lecture: </span>[https://www.youtube.com/watch?v=v1DbcJD4Ry0 Next-Generation Sequencing Technologies (2016) - Elaine Mardis - YouTube] | *<span style="font-size:16px;"> * Long lecture: </span>[https://www.youtube.com/watch?v=v1DbcJD4Ry0 Next-Generation Sequencing Technologies (2016) - Elaine Mardis - YouTube] | ||
| Line 37: | Line 40: | ||
*'''[[Nanopore_''''''sequencing|Nanopore ''''''sequencing''''']]''': [https://www.youtube.com/watch?v=RcP85JHLmnI How nanopore sequencing works - YouTube] (short) | *'''[[Nanopore_''''''sequencing|Nanopore ''''''sequencing''''']]''': [https://www.youtube.com/watch?v=RcP85JHLmnI How nanopore sequencing works - YouTube] (short) | ||
* * [https://www.youtube.com/watch?v=E9-Rm5AoZGw Nanopore DNA sequencing - YouTube] (longer) | * * [https://www.youtube.com/watch?v=E9-Rm5AoZGw Nanopore DNA sequencing - YouTube] (longer) | ||
| + | *RNA-seq: [https://www.youtube.com/watch?v=8lAVfKbRK3I The Beginner's Guide to RNA-Seq - #ResearchersAtWork Webinar Series - YouTube] | ||
---- | ---- | ||
| − | '''[[Epigenomics|Epigenomics]] lecture: | + | '''[[Epigenomics|Epigenomics]] lecture: Learn what epigenetic effect is in biology. How can environment affect genes directly?''' |
| + | *[https://www.youtube.com/watch?v=i9a-ru2ES6Y Epigenetics - YouTube] | ||
| + | *[https://www.youtube.com/watch?v=IAu44BkOaSs Introduction to epigenetics - YouTube] <img style="width: 148px; height: 40px;" src=http://Biolecture.org/upload/20210301024927_image.png> | ||
| + | *[https://www.youtube.com/watch?v=0dOFztY3VJY EPIGENETICS & CHROMATIN STATES - An introduction to histone modifications & gene transcription roles - YouTube] | ||
| + | **Contents: [https://www.youtube.com/watch?v=0dOFztY3VJY&t=35s 0:35] Defining the epigenetic memory of gene expression [https://www.youtube.com/watch?v=0dOFztY3VJY&t=157s 2:37] Chromatin and histones [https://www.youtube.com/watch?v=0dOFztY3VJY&t=432s 7:12] Histone modifications [https://www.youtube.com/watch?v=0dOFztY3VJY&t=479s 7:59] Histone acetylation and reading by bromodomain proteins [https://www.youtube.com/watch?v=0dOFztY3VJY&t=722s 12:02] Histone methylation and reading by chromodomain proteins [https://www.youtube.com/watch?v=0dOFztY3VJY&t=1157s 19:17] The complex language of histone modifications [https://www.youtube.com/watch?v=0dOFztY3VJY&t=1313s 21:53] How a core set of marks help define chromatin states | ||
*''' * '''[https://www.youtube.com/watch?v=wDjLQk3hvFk Howard Chang (Stanford, HHMI) 1: Epigenomic Technologies - YouTube] | *''' * '''[https://www.youtube.com/watch?v=wDjLQk3hvFk Howard Chang (Stanford, HHMI) 1: Epigenomic Technologies - YouTube] | ||
* * [https://www.youtube.com/watch?v=_aAhcNjmvhc What is epigenetics? - Carlos Guerrero-Bosagna - YouTube] | * * [https://www.youtube.com/watch?v=_aAhcNjmvhc What is epigenetics? - Carlos Guerrero-Bosagna - YouTube] | ||
| Line 49: | Line 57: | ||
---- | ---- | ||
| − | [['''Sequence_''''''alignment|'''Sequence ''''''alignment'']]''': | + | [['''Sequence_''''''alignment|'''Sequence ''''''alignment'']]''': Sequence alignment algorithms. How computers can align DNA?''' |
| − | ** | + | *'''[https://www.youtube.com/watch?v=OSKwuOccAak Comparing DNA Sequences - YouTube]''' |
| + | *[https://www.youtube.com/watch?v=aPQY__2H3tE 5 Simple Steps for Solving Dynamic Programming Problems - YouTube] | ||
*'''* [https://www.youtube.com/watch?v=oBt53YbR9Kk Dynamic Programming - Learn to Solve Algorithmic Problems & Coding Challenges - YouTube]''' | *'''* [https://www.youtube.com/watch?v=oBt53YbR9Kk Dynamic Programming - Learn to Solve Algorithmic Problems & Coding Challenges - YouTube]''' | ||
---- | ---- | ||
| − | '''[[Computers_for_genomics|Computers for genomics]]''': | + | '''[[Computers_for_genomics|Computers for genomics]]''': Understand how computers work. Computing is something special. Life is a kind of computing. |
| − | * | + | *[https://www.youtube.com/watch?v=ExxFxD4OSZ0 What does what in your computer? Computer parts Explained - YouTube] |
| − | * | + | *[https://www.youtube.com/watch?v=gtRLmL70TH0 Alan Turing - Celebrating the life of a genius - YouTube] |
| − | * | + | *[https://www.youtube.com/watch?v=dNRDvLACg5Q Turing Machines Explained - Computerphile - YouTube] |
| − | + | *[https://www.youtube.com/watch?v=gJQTFhkhwPA Turing Machines - YouTube] | |
| − | * | + | *Real physical machine: [https://www.youtube.com/watch?v=E3keLeMwfHY A Turing Machine - Overview - YouTube ] |
| − | * | + | *[https://www.youtube.com/watch?v=WgEsPTAL55Q Regular Grammar - YouTube] |
| − | * | + | *[https://www.youtube.com/watch?v=I6K-QuE87NM Definition: Context-Free Grammars - YouTube] |
| + | *[https://www.youtube.com/watch?v=pJ607nDnyE0 Linux Explained in 2020: Just What is The Linux Kernel?! - YouTube] | ||
---- | ---- | ||
| − | '''[[Genome_Assembly|Genome Assembly]]''' | + | '''[[Genome_Assembly|Genome Assembly]]: Assembling a genome from short and long sequence data.''' |
| − | + | *Lecture[https://www.youtube.com/watch?v=5wvGapmA5zM Fundamentals of Genome Assembly - YouTube] | |
| − | * * Nanopore long reads assembly [https://www.youtube.com/watch?v=Zug8FonO8Vo Nanopore Sequencing Technology and Tools for Genome Assembly - Damla Senol Cali - AACBB 2019 Talk - YouTube] | + | *[https://www.youtube.com/watch?v=KASvlXYPCBI An overview of DNA sequence assembly - YouTube] by Rob Edwards |
| + | *[https://www.youtube.com/watch?v=sseqEefj6Gs Naive DNA sequence assembly - YouTube] by Rob Edwards | ||
| + | *[https://www.youtube.com/watch?v=VNKWrEqg60Y Genome Assembly - YouTube] by Sacan | ||
| + | *Nanopore long reads assembly [https://www.youtube.com/watch?v=Zug8FonO8Vo Nanopore Sequencing Technology and Tools for Genome Assembly - Damla Senol Cali - AACBB 2019 Talk - YouTube] | ||
---- | ---- | ||
| − | '''[[Phylogenetic_tree|Phylogenetic tree]]''' (tree of life): | + | '''[[Phylogenetic_tree|Phylogenetic tree]]''' (tree of life): Phylo tree is a bad but useful tool to understand genes and genomes. |
| − | ** | + | *[[The_origin_of_Korean_people_using_genome_data|The origin of Korean people using genome data]] |
| − | * | + | *[https://www.youtube.com/watch?v=fQwI90bkJl4 Phylogenetics - YouTube] |
| + | *[https://www.youtube.com/watch?v=09eD4A_HxVQ Creating a Phylogenetic Tree - YouTube] | ||
---- | ---- | ||
| − | '''[[Comparative_Genomics|Comparative Genomics]]''' | + | '''[[Comparative_Genomics|Comparative Genomics]]: H'''ow we can compare life using genomes. |
| − | ** | + | *[https://www.youtube.com/watch?v=Irs65GAu1YM What is Comparative Genomics? - YouTube] |
| − | * | + | *[https://www.youtube.com/watch?v=U5CHfCIOPGI Perspectives in Comparative Genomics and Evolution - YouTube] |
| + | *[https://www.youtube.com/watch?v=FgakZw6K1QQ Principal Component Analysis (PCA), Step-by-Step - YouTube] | ||
---- | ---- | ||
| − | '''[[Evolution|Evolution]]''' (genome perspective): | + | '''[[Evolution|Evolution]]''' (genome perspective): |
| − | * | + | *[https://www.youtube.com/watch?v=S1t5_iGN0xE Evolution vs Natural Selection - YouTube] |
| − | * | + | *[https://www.youtube.com/watch?v=JOk_0mUT_JU Theory of Evolution: How did Darwin come up with it? - BBC News - YouTube] |
| + | *[https://www.youtube.com/watch?v=kNPbjtej1Hk Evolution - What Darwin Never Knew - NOVA Full Documentary HD - YouTube] | ||
*[[Is_Darwinian_evolution_correct?|Is Darwinian evolution correct?]] | *[[Is_Darwinian_evolution_correct?|Is Darwinian evolution correct?]] | ||
| − | ** [https://www.youtube.com/watch?v=qYWsvtL16_k Is evolution wrong? | Massimo Pigliucci, Zanna Clay, Tim Lewens - YouTube] | + | ** [https://www.youtube.com/watch?v=qYWsvtL16_k Is evolution wrong? | Massimo Pigliucci, Zanna Clay, Tim Lewens - YouTube] |
---- | ---- | ||
| Line 100: | Line 116: | ||
'''[[The_human_genome_project|The human genome project]]''' | '''[[The_human_genome_project|The human genome project]]''' | ||
| − | * | + | *[https://www.youtube.com/watch?v=FCzcPSMz1tA CARTA: DNA–Neandertal and Denisovan Genomes;Neandertal Genes in Humans;Neandertal Interbreeding - YouTube] |
| + | *[https://www.youtube.com/watch?v=qOW5e4BgEa4 Lessons from the Human Genome Project - YouTube] | ||
---- | ---- | ||
| Line 106: | Line 123: | ||
'''[[Korean_genome_project|Korean genome project]]: [[Who_are_Koreans?|Who are Koreans?]]''' | '''[[Korean_genome_project|Korean genome project]]: [[Who_are_Koreans?|Who are Koreans?]]''' | ||
| − | * | + | *[https://www.youtube.com/watch?v=tK2KCmeOT8o 게놈분석 통한 한국인 기원과 이동 동영상 - YouTube] |
---- | ---- | ||
| Line 112: | Line 129: | ||
'''[[Whale_genome_analysis|Whale genome analysis]]''' and '''[[Whale_shark_genome_analysis|whale shark genome analysis]]''' | '''[[Whale_genome_analysis|Whale genome analysis]]''' and '''[[Whale_shark_genome_analysis|whale shark genome analysis]]''' | ||
| + | * | ||
** [https://www.youtube.com/watch?v=ZVXRrzMF530 100살 사는 고래상어 게놈 분석…장수 비결 실마리 / YTN 사이언스 - YouTube] | ** [https://www.youtube.com/watch?v=ZVXRrzMF530 100살 사는 고래상어 게놈 분석…장수 비결 실마리 / YTN 사이언스 - YouTube] | ||
| − | ** [https://www.youtube.com/watch?v=7cJnnUF2XhE The Evolutionary History of Whales - Cetacean Evolution Part 1 - YouTube] | + | ** [https://www.youtube.com/watch?v=7cJnnUF2XhE The Evolutionary History of Whales - Cetacean Evolution Part 1 - YouTube] |
---- | ---- | ||
| Line 119: | Line 137: | ||
'''[[Tiger_genome_analyses|Tiger genome analyses]]''' | '''[[Tiger_genome_analyses|Tiger genome analyses]]''' | ||
| − | ** [https://www.youtube.com/watch?v=EkSwjuN_t9k tiger genome project-PGI - YouTube] | + | * |
| + | ** [https://www.youtube.com/watch?v=EkSwjuN_t9k tiger genome project-PGI - YouTube] | ||
---- | ---- | ||
| Line 129: | Line 148: | ||
<br/> '''[[Genomes_and_aging|Genomes and aging]] ([[Telomere|telomere]])''' | <br/> '''[[Genomes_and_aging|Genomes and aging]] ([[Telomere|telomere]])''' | ||
| − | ** [https://www.youtube.com/watch?v=Ker58CPjDJs DNA Methylation | Stop DNA From Aging With TMG? - YouTube] | + | * |
| + | ** [https://www.youtube.com/watch?v=Ker58CPjDJs DNA Methylation | Stop DNA From Aging With TMG? - YouTube] | ||
---- | ---- | ||
| − | <span style="font-size:16px;">[[UNIST_Genomics_course_2021|<img style="null" src=http://biolecture.org/extensions/WYSIWYG/ckeditor/plugins/smiley/images/lightbulb.png>UNIST Genomics course 2021]] | [[Jong_Bhak's_Genomics_Syllabus|Jong Bhak's Genomics Syllabus]]</span> | + | <span style="font-size:16px;">[[UNIST_Genomics_course_2021|<img style="null" src=http://biolecture.org/extensions/WYSIWYG/ckeditor/plugins/smiley/images/lightbulb.png>UNIST Genomics course 2021]] | [[Jong_Bhak's_Genomics_Syllabus|Jong Bhak's Genomics Syllabus]] | [[Genomics_2021_Homework|Genomics 2021 Homework]]</span> |
| | ||
Latest revision as of 03:01, 1 March 2021
Jong Bhak's 2021 Genomics Lecture videos. All on this page.
UNIST Genomics course 2021 | Jong Bhak's Genomics Syllabus
Genomics intro: https://youtu.be/kflrpWKjGBU 
- What is Science? Asking Questions and Defining Problems - YouTube
- What is life? What is life"-lecture: Denis Noble - YouTube
- What is information: The Power And Story Of Information | Order and Disorder | Spark - YouTube
- What is DNA? What is DNA? - YouTube
- What is DNA replication? DNA Replication - YouTube
- What is a genome? What is a genome? - YouTube (British)
- What is a chromosome? What are Chromosomes? - YouTube
- How DNA was discovered and DNA structure? DNA and RNA - Part 1 - YouTube
Genome sequencing: Try to understand what a string/sequence is. How do we sequence DNA, RNA, and Proteins?
- Sanger genome sequencing: The Sanger Method of DNA Sequencing - YouTube | How Sanger Sequencing Works? (Classic Sanger Method) - YouTube
- What is a string and a sequence?
- What is a protein? What is a Protein? (from PDB-101) - YouTube
- Protein sequencing as a comparison Proteins! - Amino Acid Sequencing Explained - YouTube
Next Generation Sequencing: Learn what NGS is.
- NGS(차세대 유전체 해독 기술) - YouTube by GRF. Korean.
- What is Next Generation Sequencing? Next Generation Sequencing (NGS) - An Introduction - YouTube
- * Long lecture: Next-Generation Sequencing Technologies (2016) - Elaine Mardis - YouTube
- Illumina NGS sequencing Illumina Sequencing by Synthesis - YouTube
- Nanoball NGS sequencing by MGI(Complete genomics): Nanoball Sequencing - YouTube
- Sample preparation: Next Generation Sequencing 2: Illumina NGS Sample Preparation - Eric Chow (UCSF) - YouTube
- Nanopore 'sequencing: How nanopore sequencing works - YouTube (short)
- * Nanopore DNA sequencing - YouTube (longer)
- RNA-seq: The Beginner's Guide to RNA-Seq - #ResearchersAtWork Webinar Series - YouTube
Epigenomics lecture: Learn what epigenetic effect is in biology. How can environment affect genes directly?
- Epigenetics - YouTube
- Introduction to epigenetics - YouTube
- EPIGENETICS & CHROMATIN STATES - An introduction to histone modifications & gene transcription roles - YouTube
- Contents: 0:35 Defining the epigenetic memory of gene expression 2:37 Chromatin and histones 7:12 Histone modifications 7:59 Histone acetylation and reading by bromodomain proteins 12:02 Histone methylation and reading by chromodomain proteins 19:17 The complex language of histone modifications 21:53 How a core set of marks help define chromatin states
- * Howard Chang (Stanford, HHMI) 1: Epigenomic Technologies - YouTube
- * What is epigenetics? - Carlos Guerrero-Bosagna - YouTube
- Epigenetic 'sequencing (methylation sequencing): Bisulfite Sequencing - detect DNA Methylation - YouTube
- * Peter Laird: Epigenetics, DNA Methylation, and Arrays - YouTube
Sequence 'alignment: Sequence alignment algorithms. How computers can align DNA?
- Comparing DNA Sequences - YouTube
- 5 Simple Steps for Solving Dynamic Programming Problems - YouTube
- * Dynamic Programming - Learn to Solve Algorithmic Problems & Coding Challenges - YouTube
Computers for genomics: Understand how computers work. Computing is something special. Life is a kind of computing.
- What does what in your computer? Computer parts Explained - YouTube
- Alan Turing - Celebrating the life of a genius - YouTube
- Turing Machines Explained - Computerphile - YouTube
- Turing Machines - YouTube
- Real physical machine: A Turing Machine - Overview - YouTube
- Regular Grammar - YouTube
- Definition: Context-Free Grammars - YouTube
- Linux Explained in 2020: Just What is The Linux Kernel?! - YouTube
Genome Assembly: Assembling a genome from short and long sequence data.
- Lecture Fundamentals of Genome Assembly - YouTube
- An overview of DNA sequence assembly - YouTube by Rob Edwards
- Naive DNA sequence assembly - YouTube by Rob Edwards
- Genome Assembly - YouTube by Sacan
- Nanopore long reads assembly Nanopore Sequencing Technology and Tools for Genome Assembly - Damla Senol Cali - AACBB 2019 Talk - YouTube
Phylogenetic tree (tree of life): Phylo tree is a bad but useful tool to understand genes and genomes.
- The origin of Korean people using genome data
- Phylogenetics - YouTube
- Creating a Phylogenetic Tree - YouTube
Comparative Genomics: How we can compare life using genomes.
- What is Comparative Genomics? - YouTube
- Perspectives in Comparative Genomics and Evolution - YouTube
- Principal Component Analysis (PCA), Step-by-Step - YouTube
Evolution (genome perspective):
- Evolution vs Natural Selection - YouTube
- Theory of Evolution: How did Darwin come up with it? - BBC News - YouTube
- Evolution - What Darwin Never Knew - NOVA Full Documentary HD - YouTube
- Is Darwinian evolution correct?
- CARTA: DNA–Neandertal and Denisovan Genomes;Neandertal Genes in Humans;Neandertal Interbreeding - YouTube
- Lessons from the Human Genome Project - YouTube
Korean genome project: Who are Koreans?
Whale genome analysis and whale shark genome analysis
UNIST Genomics course 2021 | Jong Bhak's Genomics Syllabus | Genomics 2021 Homework
