Difference between revisions of "Homo sapiens myosin IE"
imported>위민우 (Created page with "<p>>Perl Code of myosin IE</p> <p> </p> <p>[DNA sequence]</p> <p><span style="font-family:arial,helvetica,sans-serif">ATGGGAAGCAAAGGTGTCTACCAGTACCACTGGCAAAGCCACAAT...") |
(No difference)
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Latest revision as of 14:29, 27 May 2016
[DNA sequence]
ATGGGAAGCAAAGGTGTCTACCAGTACCACTGGCAAAGCCACAATGTCAAGCACAGTGGTGTGGACGACATGGTGCTACTGTCCAAGATCACAGAGAACTCCATCGTGGAGAATCTGAAGAA
GAGATACATGGATGACTACATTTTTACATATATAGGATCTGTATTAATCTCAGTCAACCCTTTCAAGCAGATGCCATATTTTGGGGAAAAGGAAATTGAAATGTACCAAGGAGCGGCACAGTATGAA
AACCCACCACATATCTATGCCCTTGCAGATAATATGTACAGAAACATGATCATTGACAGAGAGAACCAGTGCGTCATTATCAGTGGTGAAAGTGGTGCTGGAAAAACAGTGGCTGCCAAATATAT
CATGAGCTACATCTCCAGAGTGTCTGGAGGAGGGACCAAAGTCCAGCACGTGAAGGACATTATCCTGCAGTCCAACCCGCTGCTGGAGGCCTTCGGGAACGCCAAGACCGTCCGGAACAACA
ACTCCAGCCGATTTGGAAAATACTTTGAAATCCAGTTCAGTCCAGGTGGGGAACCAGATGGTGGAAAGATCTCCAACTTCCTTCTGGAAAAATCTAGGGTGGTGATGAGGAACCCAGGAGAGC
GGAGTTTTCACATATTTTACCAGCTCATCGAGGGCGCCTCTGCAGAGCAGAAACACAGCCTTGGCATCACCAGCATGGACTATTATTACTACCTGAGCCTCTCGGGCTCATACAAGGTTGATGAC
ATTGACGACAGGCGGGAGTTTCAGGAAACTCTGCACGCCATGAATGTGATTGGGATCTTTGCAGAAGAGCAAACGCTGGTGTTGCAGATAGTGGCGGGTATTCTCCACCTGGGAAACATCAGC
TTCAAAGAAGTTGGCAACTACGCGGCTGTGGAGAGTGAAGAGTTTTTAGCTTTTCCTGCATATCTGCTAGGGATAAACCAGGACCGGTTGAAAGAAAAGCTAACAAGCCGGCAGATGGATAGC
AAGTGGGGAGGCAAATCCGAATCCATCCACGTGACCCTCAACGTAGAGCAGGCCTGTTACACCCGGGATGCGCTCGCCAAGGCCCTGCACGCCCGGGTCTTTGATTTCTTGGTAGATTCCATC
AATAAAGCCATGGAGAAAGACCATGAAGAATACAACATTGGCGTCCTAGACATCTATGGCTTTGAAATATTCCAGAAAAATGGCTTTGAACAGTTTTGTATCAATTTTGTTAATGAAAAACTGCAG
CAGATTTTTATTGAACTGACATTAAAGGCAGAACAGGAAGAATATGTTCAAGAGGGAATAAGATGGACACCCATTGAGTACTTTAATAATAAAATCGTATGTGACCTCATAGAGAACAAAGTGAAC
CCTCCTGGCATCATGAGCATCCTGGATGACGTGTGCGCCACGATGCATGCGGTGGGTGAGGGGGCAGATCAGACGCTGCTCCAGAAACTTCAGATGCAGATTGGGAGTCATGAGCACTTCAA
CAGTTGGAACCAAGGCTTCATCATTCATCATTATGCTGGGAAGGTATCCTATGACATGGATGGCTTTTGTGAAAGGAACCGGGATGTGCTTTTTATGGATCTCATCGAGCTTATGCAGAGCAGCG
AGCTGCCTTTCATAAAGTCTTTATTTCCGGAAAATCTGCAGGCTGACAAGAAAGGGCGCCCAACTACTGCCGGAAGCAAAATAAAGAAACAAGCCAATGACCTTGTGAGCACCCTGATGAAATG
TACGCCCCACTACATTCGCTGCATCAAGCCAAACGAAACCAAGAAGCCCAGAGACTGGGAGGAAAGCAGGGTAAAGCATCAAGTCGAATATTTGGGTCTGAAAGAGAACATTCGAGTGAGAA
GAGCTGGCTATGCCTATCGGCGCATCTTCCAAAAATTCCTACAGAGGTATGCCATTCTGACCAAAGCCACCTGGCCTTCTTGGCAGGGAGAGGAGAAGCAAGGCGTCCTGCACCTGCTGCAGT
CGGTCAACATGGACAGCGACCAGTTCCAGCTGGGGAGGAGTAAAGTGTTCATCAAAGCCCCCGAGTCTCTATTTCTTTTAGAAGAGATGAGAGAGAGAAAGTATGATGGGTATGCTCGAGTGA
TACAGAAATCATGGAGGAAATTCGTGGCCCGGAAGAAATACGTTCAAATGAGAGAAGAAGCCTCAGACCTCTTATTGAACAAGAAGGAGAGAAGGAGAAACAGTATTAACAGGAACTTTATAG
GGGATTATATTGGGATGGAAGAGCACCCAGAACTCCAGCAGTTCGTGGGCAAGAGGGAGAAGATTGATTTCGCAGACACAGTCACCAAGTATGACAGGAGGTTCAAGGGTGTAAAGCGAGAC
CTGCTCCTTACCCCAAAGTGCTTGTACTTAATCGGACGAGAAAAAGTCAAACAGGGCCCAGACAAGGGCCTGGTGAAAGAAGTCCTGAAGCGGAAAATCGAGATAGAACGGATCTTGTCTGTG
TCCCTCAGTACTATGCAGGATGACATTTTTATTCTCCATGAGCAAGAGTATGACAGTTTGCTTGAATCTGTCTTCAAAACTGAATTCCTAAGCCTCTTAGCAAAGCGTTACGAGGAGAAGACCCAG
AAGCAACTACCTCTGAAATTCAGCAATACGCTTGAACTGAAGTTGAAAAAGGAAAACTGGGGCCCCTGGAGTGCAGGGGGCTCCCGGCAAGTGCAGTTCCACCAAGGGTTTGGGGACCTGG
CTGTCCTCAAGCCCAGTAACAAAGTGCTGCAGGTCAGCATCGGACCTGGACTGCCCAAGAACTCCCGTCCTACCAGAAGGAACACTACCCAAAATACAGGTTATTCCAGTGGGACTCAAAATG
CCAACTACCCAGTGAGAGCTGCCCCTCCTCCCCCAGGATACCATCAGAACGGAGTCATCAGAAACCAGTATGTGCCATATCCCCATGCTCCTGGAAGCCAGAGGTCCAATCAGAAAAGCCTGTA
CACCTCCATGGCCCGCCCGCCCTTGCCTCGGCAGCAGTCTACCAGTTCAGACCGAGTGTCACAGACGCCAGAGAGCCTGGATTTCCTCAAGGTCCCGGACCAGGGAGCTGCAGGGGTCAGG
AGACAAACAACCAGTCGGCCTCCCCCAGCAGGGGGCAGACCCAAGCCCCAGCCCAAGCCCAAGCCTCAGGTGCCACAGTGCAAGGCTTTGTATGCCTATGACGCTCAGGACACAGACGAAC
TCAGCTTTAATGCCAATGACATTATTGATATTATCAAAGAAGATCCTTCTGGCTGGTGGACGGGTCGACTACGAGGCAAGCAGGGCCTGTTCCCCAACAACTATGTGACCAAGATCTGA
[Amino acid sequence]
MGSKGVYQYHWQSHNVKHSGVDDMVLLSKITENSIVENLKKRYMDDYIFTYIGSVLISVNPFKQMPYFGEKEIEMYQGAAQYENPPHIYALADNMYRNMIIDRENQCVIISGESGAGKTVAAKYIMSY
ISRVSGGGTKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYFEIQFSPGGEPDGGKISNFLLEKSRVVMRNPGERSFHIFYQLIEGASAEQKHSLGITSMDYYYYLSLSGSYKVDDIDDRREFQ
ETLHAMNVIGIFAEEQTLVLQIVAGILHLGNISFKEVGNYAAVESEEFLAFPAYLLGINQDRLKEKLTSRQMDSKWGGKSESIHVTLNVEQACYTRDALAKALHARVFDFLVDSINKAMEKDHEEYNIGVL
DIYGFEIFQKNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVQEGIRWTPIEYFNNKIVCDLIENKVNPPGIMSILDDVCATMHAVGEGADQTLLQKLQMQIGSHEHFNSWNQGFIIHHYAGKVSYDMDG
FCERNRDVLFMDLIELMQSSELPFIKSLFPENLQADKKGRPTTAGSKIKKQANDLVSTLMKCTPHYIRCIKPNETKKPRDWEESRVKHQVEYLGLKENIRVRRAGYAYRRIFQKFLQRYAILTKATWPS
WQGEEKQGVLHLLQSVNMDSDQFQLGRSKVFIKAPESLFLLEEMRERKYDGYARVIQKSWRKFVARKKYVQMREEASDLLLNKKERRRNSINRNFIGDYIGMEEHPELQQFVGKREKIDFADTVTK
YDRRFKGVKRDLLLTPKCLYLIGREKVKQGPDKGLVKEVLKRKIEIERILSVSLSTMQDDIFILHEQEYDSLLESVFKTEFLSLLAKRYEEKTQKQLPLKFSNTLELKLKKENWGPWSAGGSRQVQFHQ
GFGDLAVLKPSNKVLQVSIGPGLPKNSRPTRRNTTQNTGYSSGTQNANYPVRAAPPPPGYHQNGVIRNQYVPYPHAPGSQRSNQKSLYTSMARPPLPRQQSTSSDRVSQTPESLDFLKVPDQGA
AGVRRQTTSRPPPAGGRPKPQPKPKPQVPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI
[Second structure]
It is too long, so I separate sequences and analyse.
http://www.compbio.dundee.ac.uk/jpred4/results/jp_fQEFVex/jp_fQEFVex.results.html
http://www.compbio.dundee.ac.uk/jpred4/results/jp_M7yc4W5/jp_M7yc4W5.results.html
http://www.compbio.dundee.ac.uk/jpred4/results/jp_hybwc_M/jp_hybwc_M.results.html
Simple result : (H=alpha helix E=beta sheet)
------EEEE---------------------HHHHHHHHHHHHH----------EEEEE-----------HHHHHHH---------HHHHHHHHHHHHHHH-----EEEEE------HHHHHHHHHHHHHH----------HHHHHHHH-HHHHHHH---------------EEEEEE-----EEEEE----------EEE-------HHHHHHHHH---HHHHHHHH----------------------HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH----EEEE---------HHHHHHHHHH----HHHHHHHHH---EEEEEE---EEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------EE-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHH---------E----------------HHHHHHHHHHH--------------EEEEEE---EEEEE--EE--------HHHHHHHHH----HHH-----------------HHHHHHHHHHHHHHHHH----EEEEEE------------HHHHHHHHHH--HHHHHHHHH--------HHHHHHHHHHH-----------HHHHHHHHHHH-------EEEEEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHH---------HHEE-----EEEHHHHHHH-------HEEEH---EEE--------------EEEE--------------HHHHHHHHHH-HHHH----------HHHHH--------------HHHHH-----HHHHHH------------------------------------------------------------------------------------------------------------------------------------------------EEEEEE---------EEE----EEEEEEE----EEEEEE--EEEEE----EE--
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