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UNIST Bioinformatics course syllabus

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<p><table style="border-collapse: collapse" cellspacing="0" cellpadding="0" border="0"> <tbody> <tr style="height: 16.5pt"> <td style="border-top: rgb(0,0,0); height: 16.5pt; border-right: rgb(0,0,0); width: 505.5pt; border-bottom: rgb(0,0,0); padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0); padding-right: 1.4pt; background-color: transparent" width="843" colspan="7"> <div style="text-align: center; line-height: 160%; -ms-word-break: keep-all" align="center"><b><span style="font-size: 14pt; color: black; line-height: 160%">Syllabus</span></b></div> </td> </tr> <tr style="height: 18.75pt"> <td style="border-top: rgb(0,0,0) 0px; height: 18.75pt; border-right: rgb(0,0,0) 0px; width: 255pt<p>&nbsp;</p> <table border="0" cellpadding="0" cellspacing="0" style="border-collapse:collapse"> <tbody> <tr> <td colspan="7" style="background-color: transparent; width: 505.5pt; height: 16.5pt"> <div style="text-align: center; line-height: 160%; word-break: keep-all"><strong><span style="color:black; font-size:14pt">Syllabus 2019</span></strong></div> </td> </tr> <tr> <td colspan="3" style="background-color: transparent; width: 255pt; height: 18.75pt"> <div style="line-height: 160%; word-break: keep-all"><strong><span style="color:black">Course Information&nbsp; Bioinformatics</span></strong></div> </td> <td colspan="4" style="background-color: transparent; width: 250.5pt; height: 18.75pt"> <p><strong><span style="color:black">Instructor Information [[Dugwoo Nam]] &amp; [[Jong Bhak]]</span></strong>
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</p><div style="line-height: 160%; -ms-word-break: keep-all">&nbsp;</div> <div style="line-height: 160%; -ms-word-break: keep-all"><span style="font-size: 12pt; color: black; linefont-heightsize: 160%12pt">Weekly Schedule</span></div> <p>&nbsp;</p> <table style="border-collapse: collapse" cellspacing="0" cellpadding="0" bordercellspacing="0" style="border-collapse:collapse"> <tbody> <tr > <td style="width: 42.75pt; height: 14.7pt"> <td div style="bordertext-topalign: black 1pt solidcenter; line-height: 14.7pt160%; borderword-rightbreak: black 1pt solid; width: 42.75pt; background: rgb(214,214,214); borderkeep-bottomall"><span style="color: black 1pt solid; padding-bottom: 1.4pt; padding-top">Week</span></div> </td> <td style="width: 1.4pt462pt; padding-leftheight: 114.4pt; border7pt"> <div style="text-leftalign: black 1pt solidcenter; paddingline-right: 1.4pt; border-image: none" width="71"> <div style="text-align: center; line-heightheight: 160%; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 160%">">Contents<font size="2"/span>Week</fontdiv> </spantd> </divtr> </tdtr> <td style="borderbackground-topcolor: black 1pt solidtransparent; heightwidth: 1442.7pt75pt; borderheight: 35.65pt"> <div style="text-rightalign: black 1pt solidcenter; widthword-break: 462pt; background: rgb(214,214,214); borderkeep-bottomall"><span style="color: black 1pt solid; padding">01</span></div> </td> <td style="background-bottomcolor: 1.4pttransparent; padding-topwidth: 1.4pt462pt; padding-leftheight: 135.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; border-image: none" width="77065pt"> <div p style="text-align: center; line-height: 160%; left">Introduction to Bioinformatics, Introduction to Microarray, RNA-ms-word-break: keep-all" align="center"seq</p> </td> <span style="color/tr> <tr> <td style="background-color: transparent; width: black42.75pt; line-height: 160%35.65pt"> <font sizediv style="2">Contentstext-align: center; word-break: keep-all"></fontspan style="color:black">02</span></div> </td> </tr> <tr td style="background-color: transparent; width: 462pt; height: 35.65pt"> <td style="border-topp>Microarray &amp; gene data analysis I: rgbNormalization, Identification of DEGs (0R language),0,0Gene list analysis with DAVID and STRING(web) 0px; height: 35.65pt; border</p> </td> </tr> <tr> <td style="background-rightcolor: black 1pt solidtransparent; width: 42.75pt; border-bottomheight: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="7135.65pt"> <div style="text-align: center; -ms-word-break: keep-all" align="center"><span style="color: black"><font size="2">01</font>03</span></div> </td> <td style="borderbackground-topcolor: transparent; width: rgb(0,0,0) 0px462pt; height: 35.65pt"> <p>Microarray &amp; border-right: black 1pt solid; widthgene data analysis II: 462pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; paddingClustering, (R, cluster, treeview), Dimension Reduction (PCA), survival analysis</p> </td> </tr> <tr> <td style="background-topcolor: 1.4pttransparent; padding-leftwidth: 142.4pt75pt; border-leftheight: rgb(0,0,0) 0px; padding-right: 135.4pt; background-color: transparent" width="77065pt"> <p div style="text-align: leftcenter; -ms-word-break: keep-all" align="left"><span style="serifcolor: black"><font size="2">Introduction to Bioinformatics, Introduction to Microarray, RNA-seq</font>04</span></pdiv> </td> </tr> <tr td style="heightbackground-color: 35transparent; width: 462pt; height: 35.65pt"> <td div style="borderline-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 42.75pt; border115%">Test 1</div> </td> </tr> <tr> <td style="background-bottomcolor: black 1pt solidtransparent; padding-bottomwidth: 142.4pt75pt; padding-topheight: 135.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="7165pt"> <div style="text-align: center; -ms-word-break: keep-all" align="center"><span style="color: black">05<font size="2">02</font><//span></div> </td> <td style="borderbackground-topcolor: transparent; width: rgb(0,0,0) 0px462pt; height: 35.65pt; border"> <p style="text-right: black 1pt solid; width: 462pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-topalign: 1.4pt; padding-left: 1.4pt; border">Gene-left: rgb(0set and pathway analysis with GSEA,0,0Introduction to classification analysis (SVM) 0px; padding-right: 1.4pt; </p> </td> </tr> <tr> <td style="background-color: transparent" ; width="770: 42.75pt; height: 35.65pt"> <p div style="linetext-align: center; word-heightbreak: 115%keep-all"><span style="serifcolor: black">06<font size="2">Microarray &amp; gene data analysis I: Normalization, Identification of DEGs (R language), Gene list analysis with DAVID and STRING(web)/span></fontdiv> </spantd> </p> </td> </tr> <tr td style="background-color: transparent; width: 462pt; height: 35.65pt"> <td div style="borderline-top: rgb(0,0,0) 0px; height: 35.65pt; border115%">RNA-right: black 1pt solid; width: 42.75pt; borderseq, ChIP-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-topseq data analysis</div> </td> </tr> <tr> <td style="background-color: 1.4pttransparent; padding-leftwidth: 142.4pt75pt; border-leftheight: black 1pt solid; padding-right: 135.4pt; background-color: transparent; border-image: none" width="7165pt"> <div style="text-align: center; -ms-word-break: keep-all" align="center"><span style="color: black"><font size="2">03</font>07</span></div> </td> <td style="borderbackground-topcolor: rgb(0,0,0) 0pxtransparent; width: 462pt; height: 35.65pt; border"> <p style="text-rightalign: black 1pt solid; widthleft">Introduction to NCBI databases: 462pt; border-bottomdata and literature search</p> </td> </tr> <tr> <td style="background-color: black 1pt solidtransparent; padding-bottomwidth: 142.4pt75pt; padding-topheight: 135.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="77065pt"> <p div style="linetext-heightalign: 115%center; word-break: keep-all"><span style="serifcolor: black">08</span></div> </td> <font sizetd style="2">Microarray &ampbackground-color: transparent; width: 462pt; gene data analysis IIheight: Clustering, (R, cluster, treeview), Dimension Reduction (PCA), survival analysis</font35.65pt"> </div style="text-align: left; word-break: keep-all"><span style="color:black">Test 2</span></pdiv> </td> </tr> <tr > <td style="heightbackground-color: transparent; width: 42.75pt; height: 35.65pt"> <td div style="bordertext-topalign: rgb(0,0,0) 0pxcenter; heightword-break: 35.65pt; borderkeep-right: black 1pt solid; widthall"><span style="color: 42.75pt; borderblack">09</span></div> </td> <td style="background-bottomcolor: black 1pt solidtransparent; padding-bottomwidth: 1.4pt462pt; padding-topheight: 135.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="7165pt"> <div style="text-align: centerleft; -ms-word-break: keep-all" align="center"><span style="color: black">&nbsp;[[Principles of Bioinformatics]]<font size="2"/span>04</fontdiv> </spantd> </divtr> </tdtr> <td style="borderbackground-topcolor: rgb(0,0,0) 0pxtransparent; width: 42.75pt; height: 35.65pt; border"> <div style="text-rightalign: black 1pt solidcenter; width: 462pt; borderword-bottombreak: black 1pt solid; paddingkeep-bottom: 1.4pt; paddingall"><span style="color:black">10</span></div> </td> <td style="background-topcolor: 1.4pttransparent; padding-leftwidth: 1.4pt462pt; border-leftheight: rgb(0,0,0) 0px; padding-right: 135.4pt; background-color: transparent" width="77065pt"> <div style="linetext-heightalign: 115%left; word-break: keep-all"><span style="serifcolor: black"><font size="2">Test 1</font>&nbsp;[[Bioprogramming]]</span></div> </td> </tr> <tr style="height: 35.65pt"> <td style="borderbackground-topcolor: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solidtransparent; width: 42.75pt; border-bottomheight: black 1pt solid; padding35.65pt"> <div style="text-bottomalign: 1.4ptcenter; paddingword-topbreak: 1.4pt; paddingkeep-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="71all"> <div span style="text-align: center; -ms-word-break: keep-all" align="centercolor:black">11</span ></div> </td> <td style="background-color: black"><font size="2transparent; width: 462pt; height: 35.65pt">05</font></span> </div> </td> <td style="bordertext-topalign: rgb(0,0,0) 0pxleft; height: 35.65pt; borderword-rightbreak: black 1pt solid; width: 462pt; borderkeep-bottomall"><span style="color: black 1pt solid">&nbsp; padding-bottom[[Genomics]]</span></div> </td> </tr> <tr> <td style="background-color: 1.4pttransparent; padding-topwidth: 142.4pt75pt; padding-leftheight: 135.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="77065pt"> <p div style="text-align: leftcenter; -ms-word-break: keep-all" align="left">><span style="serifcolor: black"><font size="2">Gene-set and pathway analysis with GSEA, Introduction to classification analysis (SVM)</font>12</span></pdiv> </td> </tr> <tr td style="background-color: transparent; width: 462pt; height: 35.65pt"> <td div style="bordertext-topalign: rgb(0,0,0) 0pxleft; heightword-break: 35.65pt; borderkeep-right: black 1pt solid; width: 42.75pt; border-bottomall"><span style="color: black 1pt solid">&nbsp; padding-bottom: 1.4pt; padding-top: 1.4pt; padding[[Transcriptomics]]</span></div> </td> </tr> <tr> <td style="background-leftcolor: 1.4pttransparent; border-leftwidth: black 1pt solid42.75pt; padding-rightheight: 135.4pt; background-color: transparent; border-image: none" width="7165pt"> <div style="text-align: center; -ms-word-break: keep-all" align="center"><span style="color: black"><font size="2">06</font>13</span></div> </td> <td style="borderbackground-topcolor: rgb(0,0,0) 0pxtransparent; width: 462pt; height: 35.65pt; border"> <div style="text-rightalign: black 1pt solidleft; width: 462pt; borderword-bottombreak: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; backgroundkeep-all"><span style="color: transparent" width="770black">&nbsp;[[Proteomics]]</span></div> </td> </tr> <tr> <div td style="linebackground-heightcolor: 115%">transparent; width: 42.75pt; height: 35.65pt"> <span div style="seriftext-align: center; word-break: keep-all"><font sizespan style="2color:black">RNA-seq, ChIP-seq data analysis</font><14</span></div> </td> </tr> <tr td style="background-color: transparent; width: 462pt; height: 35.65pt"> <td div style="bordertext-topalign: rgb(0,0,0) 0px; height: 35.65pt; borderleft; word-rightbreak: black 1pt solid; width: 42.75pt; borderkeep-bottomall"><span style="color: black 1pt solid">&nbsp; padding-bottom: 1.4pt; padding[[Epigenomics]]</span></div> </td> </tr> <tr> <td style="background-topcolor: 1.4pttransparent; padding-leftwidth: 142.4pt75pt; border-leftheight: black 1pt solid; padding-right: 135.4pt; background-color: transparent; border-image: none" width="7165pt"> <div style="text-align: center; -ms-word-break: keep-all" align="center"><span style="color: black">15<font size="2">07</font></span>/span></div> </td> <td style="borderbackground-topcolor: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solidtransparent; width: 462pt; border-bottomheight: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="770"> <p style="text-align: left; -ms-word-break: keep-all" align="left"><span style="serif: "><font size="2">Introduction to NCBI databases: data and literature search</font></span></p> </td> </tr> <tr style="height: 35.65pt"> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 42.75pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="71"> <div style="text-align: center; -ms-word-break: keep-all" align="center"><span style="color: black"><font size="2">08</font></span></div> </td> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 462pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="770"> <div style="text-align: left; -ms-word-break: keep-all" align="left"><span style="color: black; serif: "><font size="2">Test 2</font></span></div> </td> </tr> <tr style="height: 35.65pt"> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 42.75pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="71"> <div style="text-align: center; -ms-word-break: keep-all" align="center"><span style="color: black"><font size="2">09</font></span></div> </td> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 462pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="770"> <div style="text-align: left; -ms-word-break: keep-all" align="left"><span style="color: black; serif: "><font size="2">&nbsp;</font><font size="2">Principles of Bioinformatics</font></span></div> </td> </tr> <tr style="height: 35.65pt"> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 42.75pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="71"> <div style="text-align: center; -ms-word-break: keep-all" align="center"><span style="color: black"><font size="2">10</font></span></div> </td> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 462pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="770"> <div style="text-align: left; -ms-word-break: keep-all" align="left"><span style="color: black; serif: "><font size="2">&nbsp;</font><font size="2">Bioprogramming</font></span></div> </td> </tr> <tr style="height: 35.65pt"> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 42.75pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="71"> <div style="text-align: center; -ms-word-break: keep-all" align="center"><span style="color: black"><font size="2">11</font></span></div> </td> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 462pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="770"> <div style="text-align: left; -ms-word-break: keep-all" align="left"><span style="color: black; serif: "><font size="2">&nbsp;</font><font size="2">Genomics</font></span></div> </td> </tr> <tr style="height: 35.65pt"> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 42.75pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="71"> <div style="text-align: center; -ms-word-break: keep-all" align="center"><span style="color: black"><font size="2">12</font></span></div> </td> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 462pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="770"> <div style="text-align: left; -ms-word-break: keep-all" align="left"><span style="color: black; serif: "><font size="2">&nbsp;</font><font size="2">Transcriptomics</font></span></div> </td> </tr> <tr style="height: 35.65pt"> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 42.75pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="71"> <div style="text-align: center; -ms-word-break: keep-all" align="center"><span style="color: black"><font size="2">13</font></span></div> </td> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 462pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="770"> <div style="text-align: left; -ms-word-break: keep-all" align="left"><span style="color: black; serif: "><font size="2">&nbsp;</font><font size="2">Proteomics</font></span></div> </td> </tr> <tr style="height: 35.65pt"> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 42.75pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="71"> <div style="text-align: center; -ms-word-break: keep-all" align="center"><span style="color: black"><font size="2">14</font></span></div> </td> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 462pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="770"> <div style="text-align: left; -ms-word-break: keep-all" align="left"><span style="color: black; serif: "><font size="2">&nbsp;</font><font size="2">Epigenomics</font></span></div> </td> </tr> <tr style="height: 35.65pt"> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 42.75pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="71"> <div style="text-align: center; -ms-word-break: keep-all" align="center"><span style="color: black"><font size="2">15</font></span></div> </td> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 462pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="77035.65pt"> <div style="text-align: left; -ms-word-break: keep-all" align="left"><span style="color: black; serif: "><font size="2">&nbsp;</font><font size="2">[[Canceromics and Geromics</font>]]</span></div> </td> </tr> </tbody>
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 <div>&nbsp;</div> <hr /><p>[[UNIST Bioinformatics course]]&nbsp; [http://bioinformatics.ws Bioinformatics.ws]<div/p> <font size="2"p>&nbsp;</fontp<p>&nbsp;</divp>
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