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<h1><strong><b><span langstyle="ENfont-USsize:x-large"><strong><strong>Bioinformatics</spanstrong></bstrong></strongspan></h1> <p style="font-family: -apple-system-font; line-height: 16px;"><span style="font-size: larger;"><span lang="EN-US">In bioinformatics, all biological data are regarded as information. So, by combining various fields such as computer science and statistics, the information is analyzed and studied.</span></spanp> <p><strong>&nbsp;</strong></p> <p ><span style="font-familysize: x-apple-system-large"><strong>Bioprogramming</strong></span></p> <p><strong><span style="font; line-heightsize: 16px;larger">Bioprogramming <b/span></strong><span langstyle="ENfont-USsize:larger">is all programming&nbsp;activities for analyzing biological data.</span></bp> </p><h1strong>&nbsp;</strong></p> <h2><span langstyle="ENfont-USsize:larger">Bioprogramming<strong><strong>Programming</strong></strong></span></h2> <p><strong><span langstyle="ENfont-USsize:larger">Programming <o:p/span></ostrong><span style="font-size:plarger">is a process that makes new algorithm from programming languages called codes through a compiler. It can convert a set of programming languages into executable programs. Programs can perform various activities like computation, analysis, algorithmic flow, and more. </span></h1p> <p ><span style="font-familysize: -apple-system-fontlarger">The <strong>computer </strong>is the electrical machine or device that carries out the programs. Computers exist in many different forms such as desktop, laptop, tablet, and etc. </span></p> <p><strong>&nbsp; line</strong></p> <h3 style="margin-heightleft: 16px;40px"><span style="font-size: larger;"><strong><strong>Compiler</strong></strong></span></h3> <p style="margin-left:40px"><strong><span langstyle="ENfont-USsize:larger">Bioprogramming is all programmingCompiler </span></strong><span langstyle="ENfont-USsize:larger">is a program that transforms programming languages into computer languages. With this process, computer can recognize the commands. The compilers have own specific programming language. C⁺⁺, for example, has c language. They are classified according to the languages and the operating systems.</span></p> <p>&nbsp;activities for analyzing biological data.</p> <h3 style="margin-left:40px"><spanstyle="font-size:larger"><strong><strong>Programming language</strong></strong></span></ph3> <p style="fontmargin-familyleft: -apple-system-40px"><strong><span style="font; line-heightsize: 16px;larger">Programming languages <b/span></strong><span langstyle="ENfont-USsize:larger">&nbsp;are generally high-level languages that are used in coding by programmers.If you compare the programming to a country, then the language is the communication medium. The 3 major types of bioprogramming languages are S, R, and Matlab. All of them are for statistical and computational use. <strong>Grammar </strong>is the rule of the languages.</span></bp> <p>&nbsp;</p> <h2><span style="font-size:larger"><strong>Perl programming<b/strong></span lang></h2> <p><span style="ENfont-USsize:larger">ProgrammingPerl is a programming language that supports scripts called a script lanuguage. It is developed by Larry wall in 1987. It is a powerful tool for varied applications such as network programming, finance, and bioinformatics.&nbsp;</span></bspan style="font-size:larger">An operating system of perl is basically Linux but almost systems support the program.&nbsp;</strongspan></h2p> <p ><span style="font-familysize:larger"><a href="http: //perl.org">site(perl.org)</a></span></p> <p style="margin-apple-system-fontleft:40px">&nbsp; line</p> <h3 style="margin-heightleft: 16px;40px"><span style="font-size: larger;"><strong>BioPerl programming</strong></span></h3> <p style="margin-left:40px"><span langstyle="ENfont-USsize:larger">Programming BioPerl is a process that makes new algorithm from programming languages called codes through collection of Perl modules for biological data processing. It is an open source software for biological applications in bioinformatics. In the Human Genome Project, the program has played a compilercentral role.&nbsp;</span></spanp> <p style="margin-left:40px"><span langstyle="ENfont-USsize:larger"><oa href="http:p//bioperl.org">site(bioperl.org)</o:pa></span></p> <p style="margin-left:40px"><span class="marker"><span style="font-size:8px"><span style="font-family: comic sans ms,cursive">Homework source:</span></span></span></p> <p style="margin-apple-system-left:40px"><span class="marker"><span style="font; line-heightsize: 16px;8px"><b><span langstyle="ENfont-USfamily:comic sans ms,cursive">&nbsp;#!/usr/bin/perl<br />use strict;<br />use warnings;</span></span></bspan></p> <h2p style="margin-left:40px"><strongspan class="marker"><bspan style="font-size:8px"><span langstyle="ENfont-USfamily:comic sans ms,cursive">Compileruse Path::Class;<br />use autodie; # die if problem reading or writing a file</span></bspan></strongspan></h2p> <p style="margin-left:40px"><span class="marker"><span style="font-size:8px"><span style="font-family: comic sans ms,cursive">my $dir = dir(&quot;C:/Temp&quot;); # C:/Temp<br />print &quot;The Fasta File will be generated in C:/Temp\n&quot;;<br />print &quot;The name of file is FASTA20131369.txt.\n&quot;;<br />my $file = $dir-apple-system-font&gt;file(&quot;file.txt&quot;); line# C:/Temp/FASTA20131369.txt</span></span></span></p> <p style="margin-heightleft: 16px;40px"><span class="marker"><span style="font-size: larger;8px"><span langstyle="ENfont-USfamily:comic sans ms,cursive">Compiler is # Get a program that transforms programming languages into computer languages. With this process, computer file_handle (IO::File object) you can recognize the commands. The compilers have own specific programming language. Cwrite to<supbr />++my $file_handle = $file-&gt;openw();</supspan>, for example, has c language. They are classified according to the languages and the operating systems.</span></span></p> <p style="margin-left:40px"><span class="marker"><span style="font-size:8px"><span style="font-family: comic sans ms,cursive">my @list = (&#39;&gt;Your_first_seq&#39;, &#39;ATATATATATATATATAATATATATATATATATAATATATATATATATATAATATATATATATATATA<br />ATATATATATATATATAATATATATATATATATAATATATATATATATATAATATATATATATATATA<br />ATATATATATATATATAATATATATATATATATAATATATATATATATATAATATATATATATATATA<br />ATATATATATATATATAATATATATATATATATAATATATATATATATATAATATATATATATATATA&#39;);</span></span></span></p> <p style="margin-apple-systemleft:40px"><span class="marker"><span style="font-size:8px"><span style="font; line-heightfamily: 16px;comic sans ms,cursive">foreach my $line ( @list ) {<br />&nbsp; &nbsp;# Add the line to the file<br />&nbsp; &nbsp; $file_handle-&gt;print($line . &quot;\n&quot;);<br />}</span></span></span></p> <h2><strong><b><span langstyle="ENfont-USsize:larger">Programming languageBioOS</span></b></strong></h2> <p ><span style="font-familysize: -apple-larger">BioOS denotes an operationg system-for bioinformatics</span></p> <p><span style="font; line-heightsize: 16pxlarger"><a href="http://bioos.org">site(bioos.org)&nbsp;</a></span></p> <p>&nbsp;"</p> <h2><span style="font-size: larger;"><strong>Other languages for Bioinformatics</strong></span lang></h2> <ul> <li><span style="ENfont-USsize:larger">Programming languages are generally high-level languages that are used in coding by programmers<a href="http://en.wikipedia.org/wiki/R_(programming_language)">R</spana></span></pli> <li><a href="http://en.wikipedia.org/wiki/S_(programming_language)"><p span style="font-familysize:larger">S</span></a></li> <li><a href="http: -apple-system-//en.wikipedia.org/wiki/MATLAB"><span style="font; line-heightsize: 16px;larger">Matlab</span></a></li></ul> <p>&nbsp;</p> <h1hr /><strongp>Perl tutorial:&nbsp; http://raven.iab.alaska.edu/~ntakebay/teaching/programming/perl1st/index.html</strongp> <p>&nbsp;</h1p>