Changes

<br/> <span style="font-size:16px;">'''[[Genomics_intro|Genomics intro]]''':&nbsp;&nbsp;[https://youtu.be/kflrpWKjGBU https://youtu.be/kflrpWKjGBU]&nbsp;<img style="width: 140px; height: 79px;" src=http://Biolecture.org/upload/20210228145053_20210228_142708.png><br/span> *<span style="font-size:16px;"> What is Science?&nbsp;[https://www.youtube.com/watch?v=LJJoKxDsyoQ Asking Questions and Defining Problems - YouTube]<br/span> *<span style="font-size:16px;"> What is life?&nbsp;[https://www.youtube.com/watch?v=hS6PDOcJwY8 What is life"-lecture: Denis Noble - YouTube]<br/span> *<span style="font-size:16px;">What is information:&nbsp;</span>[https://www.youtube.com/watch?v=qj7HH0PCqIE The Power And Story Of Information | Order and Disorder | Spark - YouTube] *<span style="font-size:16px;"> What is DNA?&nbsp;&nbsp;[https://www.youtube.com/watch?v=q6PP-C4udkA What is DNA? - YouTube]<br/span> &nbsp; &nbsp; &nbsp;&nbsp*<span style="font-size:16px;">What is DNA replication?&nbsp;&nbsp;[https://www.youtube.com/watch?v=FBmO_rmXxIw DNA Replication - YouTube]<br/span> *<span style="font-size:16px;"> What is a genome?&nbsp;[https://www.youtube.com/watch?v=zMgmI_L1ZY8 What is a genome? - YouTube]&nbsp;(British)<br/span> *<span style="font-size:16px;"> What is a chromosome?&nbsp;&nbsp;[https://www.youtube.com/watch?v=tsVHWbXqum8 What are Chromosomes? - YouTube]<br/span> *<span style="font-size:16px;"> How DNA was discovered and DNA structure?&nbsp;[https://www.youtube.com/watch?v=qoERVSWKmGk DNA and RNA - Part 1 - YouTube]</span> ---- <span style="font-size:16px;">'''[[Genome_''''''sequencing|Genome&nbsp;'''sequencing''']]: Try to understand what a string/sequence is. How do we sequence DNA, RNA, and Proteins?'''</span> *<span style="font-size:16px;">'''[[Sanger_genome_sequencing|Sanger genome sequencing]]''':&nbsp;[https://www.youtube.com/watch?v=FvHRio1yyhQ The Sanger Method of DNA Sequencing - YouTube]&nbsp; |&nbsp; &nbsp;[https://www.youtube.com/watch?v=-QIMkQ4E_wE How Sanger Sequencing Works? (Classic Sanger Method) - YouTube]</span> *What is a string and a [[Sequence|sequence]]? *<span style="font-size:16px;">What is a protein?&nbsp;[https://www.youtube.com/watch?v=wvTv8TqWC48 What is a Protein? (from PDB-101) - YouTube]</span> *<span style="font-size:16px;">Protein sequencing as a comparison[https://www.youtube.com/watch?v=2F57xjy19fk &nbsp;Proteins! - Amino Acid Sequencing Explained - YouTube]</span>  ---- [[Next_Generation_Sequencing|Next Generation Sequencing]]: Learn what NGS is. *[https://www.youtube.com/watch?v=GZejHrnWUXg NGS(차세대 유전체 해독 기술) - YouTube]&nbsp;by GRF. Korean. *<span style="font-size:16px;">What is Next Generation Sequencing?&nbsp;[https://www.youtube.com/watch?v=jFCD8Q6qSTM Next Generation Sequencing (NGS) - An Introduction - YouTube]</span> *<span style="font-size:16px;">&nbsp;* Long lecture:&nbsp;</span>[https://www.youtube.com/watch?v=v1DbcJD4Ry0 Next-Generation Sequencing Technologies (2016) - Elaine Mardis - YouTube] *'''Illumina '''NGS sequencing&nbsp;&nbsp;[https://www.youtube.com/watch?v=fCd6B5HRaZ8 Illumina Sequencing by Synthesis - YouTube] *'''Nanoball '''NGS sequencing by MGI(Complete genomics):&nbsp;[https://www.youtube.com/watch?v=RGcpftDHpng Nanoball Sequencing - YouTube] *Sample preparation:&nbsp;[https://www.youtube.com/watch?v=PFwSe09dJX0 Next Generation Sequencing 2: Illumina NGS Sample Preparation - Eric Chow (UCSF) - YouTube&nbsp;]<img style="width: 48px; height: 32px;" src=http://Biolecture.org/upload/20210228164304_image.png> *'''[[Nanopore_''''''sequencing|Nanopore ''''''sequencing''''']]''':&nbsp;[https://www.youtube.com/watch?v=RcP85JHLmnI How nanopore sequencing works - YouTube]&nbsp;(short) *&nbsp; *&nbsp;[https://www.youtube.com/watch?v=E9-Rm5AoZGw Nanopore DNA sequencing - YouTube]&nbsp;(longer) *RNA-seq:&nbsp;&nbsp;[https://www.youtube.com/watch?v=8lAVfKbRK3I The Beginner's Guide to RNA-Seq - #ResearchersAtWork Webinar Series - YouTube]  ---- '''[[Epigenomics|Epigenomics]] lecture: Learn what epigenetic effect is in biology. How can environment affect genes directly?''' *[https://www.youtube.com/watch?v=i9a-ru2ES6Y Epigenetics - YouTube] *[https://www.youtube.com/watch?v=IAu44BkOaSs Introduction to epigenetics - YouTube]&nbsp;<img style="width: 148px; height: 40px;" src=http://Biolecture.org/upload/20210301024927_image.png> *[https://www.youtube.com/watch?v=0dOFztY3VJY EPIGENETICS & CHROMATIN STATES - An introduction to histone modifications & gene transcription roles - YouTube] **Contents: [https://www.youtube.com/watch?v=0dOFztY3VJY&t=35s 0:35]​ Defining the epigenetic memory of gene expression [https://www.youtube.com/watch?v=0dOFztY3VJY&t=157s 2:37]​ Chromatin and histones [https://www.youtube.com/watch?v=0dOFztY3VJY&t=432s 7:12]​ Histone modifications [https://www.youtube.com/watch?v=0dOFztY3VJY&t=479s 7:59]​ Histone acetylation and reading by bromodomain proteins [https://www.youtube.com/watch?v=0dOFztY3VJY&t=722s 12:02]​ Histone methylation and reading by chromodomain proteins [https://www.youtube.com/watch?v=0dOFztY3VJY&t=1157s 19:17]​ The complex language of histone modifications [https://www.youtube.com/watch?v=0dOFztY3VJY&t=1313s 21:53]​ How a core set of marks help define chromatin states *'''&nbsp;*&nbsp;'''[https://www.youtube.com/watch?v=wDjLQk3hvFk Howard Chang (Stanford, HHMI) 1: Epigenomic Technologies - YouTube] *&nbsp;*&nbsp;&nbsp;[https://www.youtube.com/watch?v=_aAhcNjmvhc What is epigenetics? - Carlos Guerrero-Bosagna - YouTube] *'''[[Epigenetic_''''''sequencing|Epigenetic ''''''sequencing''''']]&nbsp;'''(methylation sequencing):&nbsp;&nbsp;[https://www.youtube.com/watch?v=OcIazFGQv0g Bisulfite Sequencing - detect DNA Methylation - YouTube] *&nbsp;*&nbsp;[https://www.youtube.com/watch?v=2X0Fm1KEWUE Peter Laird: Epigenetics, DNA Methylation, and Arrays - YouTube]  ---- [['''Sequence_''''''alignment|'''Sequence ''''''alignment'']]''': Sequence alignment algorithms. How computers can align DNA?''' *'''[https://www.youtube.com/watch?v=OSKwuOccAak Comparing DNA Sequences - YouTube]''' *[https://www.youtube.com/watch?v=aPQY__2H3tE 5 Simple Steps for Solving Dynamic Programming Problems - YouTube] *'''*&nbsp;&nbsp;[https://www.youtube.com/watch?v=oBt53YbR9Kk Dynamic Programming - Learn to Solve Algorithmic Problems & Coding Challenges - YouTube]'''  ---- '''[[Computers_for_genomics|Computers for genomics]]''': Understand how computers work. Computing is something special. Life is a kind of computing. *[https://www.youtube.com/watch?v=ExxFxD4OSZ0 What does what in your computer? Computer parts Explained - YouTube] *[https://www.youtube.com/watch?v=gtRLmL70TH0 Alan Turing - Celebrating the life of a genius - YouTube] *[https://www.youtube.com/watch?v=dNRDvLACg5Q Turing Machines Explained - Computerphile - YouTube] *[https://www.youtube.com/watch?v=gJQTFhkhwPA Turing Machines - YouTube] *Real physical machine:&nbsp;[https://www.youtube.com/watch?v=E3keLeMwfHY A Turing Machine - Overview - YouTube&nbsp;] *[https://www.youtube.com/watch?v=WgEsPTAL55Q Regular Grammar - YouTube] *[https://www.youtube.com/watch?v=I6K-QuE87NM Definition: Context-Free Grammars - YouTube] *[https://www.youtube.com/watch?v=pJ607nDnyE0 Linux Explained in 2020: Just What is The Linux Kernel?! - YouTube]

<span style="font-size:16px;">Genome '''sequencing[[Genome_Assembly|Genome Assembly]]: Assembling a genome from short and long sequence data.'''.&nbsp; </span>[https://www.youtube.com/watch?v=GZejHrnWUXg NGS(차세대 유전체 해독 기술) - YouTube]&nbsp;by GRF. Korean.<br/> &nbsp; &nbsp;  * Protein sequencing as a comparisonLecture[https://www.youtube.com/watch?v=2F57xjy19fk 5wvGapmA5zM &nbsp;Proteins! - Amino Acid Sequencing Explained Fundamentals of Genome Assembly - YouTube]<br/> <span style="font-size:16px;">Sanger genome sequencing:&nbsp;</span>*[https://www.youtube.com/watch?v=FvHRio1yyhQ The Sanger Method KASvlXYPCBI An overview of DNA Sequencing sequence assembly - YouTube]&nbsp; |&nbsp; &nbsp;by Rob Edwards *[https://www.youtube.com/watch?v=-QIMkQ4E_wE How Sanger Sequencing Works? (Classic Sanger Method) - YouTube]<br/> <span style="font-size:16px;">What is Next Generation Sequencing?&nbsp;[https://www.youtube.com/watch?v=jFCD8Q6qSTM Next Generation Sequencing (NGS) - An Introduction sseqEefj6Gs Naive DNA sequence assembly - YouTube]<br/> &nbsp; &nbsp; by Rob Edwards * Long lecture:&nbsp;</span>[https://www.youtube.com/watch?v=v1DbcJD4Ry0 Next-Generation Sequencing Technologies (2016) - Elaine Mardis VNKWrEqg60Y Genome Assembly - YouTube]<br/> Illumina NGS sequencing&nbsp;&nbsp;[https://www.youtube.com/watch?v=fCd6B5HRaZ8 Illumina Sequencing by Synthesis - YouTube]<br/> &nbsp; &nbsp; Sacan * Sample preparation:Nanopore long reads assembly&nbsp;[https://www.youtube.com/watch?v=PFwSe09dJX0 Next Generation Zug8FonO8Vo Nanopore Sequencing 2: Illumina NGS Sample Preparation Technology and Tools for Genome Assembly - Damla Senol Cali - Eric Chow (UCSF) AACBB 2019 Talk - YouTube&nbsp;]<img style="width: 72px; height: 48px;" src=http://Biolecture.org/upload/20210228164304_image.png>

&nbsp;'''[[Phylogenetic_tree|Phylogenetic tree]]''' (tree of life): Phylo tree is a bad but useful tool to understand genes and genomes. *[[The_origin_of_Korean_people_using_genome_data|The origin of Korean people using genome data]] *[https://www.youtube.com/watch?v=fQwI90bkJl4 Phylogenetics - YouTube] *[https://www.youtube.com/watch?v=09eD4A_HxVQ Creating a Phylogenetic Tree - YouTube]

&nbsp;'''[[Comparative_Genomics|Comparative Genomics]]: H'''ow we can compare life using genomes. *[https://www.youtube.com/watch?v=Irs65GAu1YM What is Comparative Genomics? - YouTube] *[https://www.youtube.com/watch?v=U5CHfCIOPGI Perspectives in Comparative Genomics and Evolution - YouTube] *[https://www.youtube.com/watch?v=FgakZw6K1QQ Principal Component Analysis (PCA), Step-by-Step - YouTube]

'''[[Evolution|Evolution]]''' (genome perspective):&nbsp; *[https://www.youtube.com/watch?v=S1t5_iGN0xE Evolution vs Natural Selection - YouTube]&nbsp; *[https://www.youtube.com/watch?v=JOk_0mUT_JU Theory of Evolution: How did Darwin come up with it? - BBC News - YouTube] *[https://www.youtube.com/watch?v=kNPbjtej1Hk Evolution - What Darwin Never Knew - NOVA Full Documentary HD - YouTube] *[[Is_Darwinian_evolution_correct?|Is Darwinian evolution correct?]] **&nbsp;[https://www.youtube.com/watch?v=qYWsvtL16_k Is evolution wrong? | Massimo Pigliucci, Zanna Clay, Tim Lewens - YouTube]

&nbsp'''[[The_human_genome_project|The human genome project]]''' *[https://www.youtube.com/watch?v=FCzcPSMz1tA CARTA: DNA–Neandertal and Denisovan Genomes;Neandertal Genes in Humans;Neandertal Interbreeding - YouTube] *[https://www.youtube.com/watch?v=qOW5e4BgEa4 Lessons from the Human Genome Project - YouTube]

'''Epigenomics&nbsp;[[Korean_genome_project|Korean genome project]]: [[Who_are_Koreans?|Who are Koreans?]]''' *[https://www.youtube.com/watch?v=wDjLQk3hvFk Howard Chang (Stanford, HHMI) 1: Epigenomic Technologies tK2KCmeOT8o 게놈분석 통한 한국인 기원과 이동 동영상 - YouTube]

'''[[Whale_genome_analysis|Whale genome analysis]]''' and '''[[Whale_shark_genome_analysis|whale shark genome analysis]]''' ***&nbsp;[https://www.youtube.com/watch?v=ZVXRrzMF530 100살 사는 고래상어 게놈 분석…장수 비결 실마리 / YTN 사이언스 - YouTube] **&nbsp;[https://www.youtube.com/watch?v=7cJnnUF2XhE The Evolutionary History of Whales - Cetacean Evolution Part 1 - YouTube]  ---- '''[[Tiger_genome_analyses|Tiger genome analyses]]''' ***&nbsp;[https://www.youtube.com/watch?v=EkSwjuN_t9k tiger genome project-PGI - YouTube]  ---- '''[[Cancer_genomes|Cancer genomes]]&nbsp;''' *'''*&nbsp;'''[https://www.youtube.com/watch?v=W-S84J4zK9E DNA Methylation and Cancer - Garvan Institute - YouTube]  <br/> '''[[Genomes_and_aging|Genomes and aging]] ([[Telomere|telomere]])''' ***&nbsp;[https://www.youtube.com/watch?v=Ker58CPjDJs DNA Methylation | Stop DNA From Aging With TMG? - YouTube]

<span style="font-size:16px;">[[UNIST_Genomics_course_2021|<img style="null" src=http://biolecture.org/extensions/WYSIWYG/ckeditor/plugins/smiley/images/lightbulb.png>UNIST Genomics course 2021]]&nbsp; |&nbsp; &nbsp;[[Jong_Bhak's_Genomics_Syllabus|Jong Bhak's Genomics Syllabus]]&nbsp; |&nbsp; &nbsp;[[Genomics_2021_Homework|Genomics 2021 Homework]]</span>